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Dissection of the bone marrow microenvironment in hairy cell leukaemia identifies prognostic tumour and immune related biomarkers.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-98536-1
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- Publication type:
- Article
Protein-protein interaction as a predictor of subcellular location.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-28
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- Publication type:
- Article
Measuring and Modelling the Epithelial- Mesenchymal Hybrid State in Cancer: Clinical Implications.
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- Cells Tissues Organs, 2022, v. 211, n. 2, p. 110, doi. 10.1159/000515289
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- Publication type:
- Article
RaftProt: mammalian lipid raft proteome database.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D335, doi. 10.1093/nar/gku1131
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- Publication type:
- Article
Therapeutic blockade of activin-A improves NK cell function and antitumor immunity.
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- Science Signaling, 2019, v. 12, n. 596, p. 1, doi. 10.1126/scisignal.aat7527
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- Publication type:
- Article
Correction to: PRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling.
- Published in:
- 2021
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- Publication type:
- Correction Notice
PRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00871-5
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- Publication type:
- Article
Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00920-z
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- Publication type:
- Article
Visualising associations between paired 'omics' data sets.
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- BioData Mining, 2012, v. 5, n. 1, p. 1, doi. 10.1186/1756-0381-5-19
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- Publication type:
- Article
Supervised, semi-supervised and unsupervised inference of gene regulatory networks.
- Published in:
- Briefings in Bioinformatics, 2014, v. 15, n. 2, p. 195, doi. 10.1093/bib/bbt034
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- Publication type:
- Article
Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibition.
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- Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01185-4
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- Publication type:
- Article
Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers.
- Published in:
- BMC Cancer, 2016, v. 16, p. 1, doi. 10.1186/s12885-016-2785-0
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- Publication type:
- Article
vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05676-y
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- Publication type:
- Article
Towards the mammalian interactome: Inference of a core mammalian interaction set in mouse.
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- Proteomics, 2009, v. 9, n. 23, p. 5256, doi. 10.1002/pmic.200900262
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- Publication type:
- Article
NK Cell Priming From Endogenous Homeostatic Signals Is Modulated by CIS.
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- Frontiers in Immunology, 2020, v. 11, p. 1, doi. 10.3389/fimmu.2020.00075
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- Publication type:
- Article
Computational Screening of Anti-Cancer Drugs Identifies a New BRCA Independent Gene Expression Signature to Predict Breast Cancer Sensitivity to Cisplatin.
- Published in:
- Cancers, 2022, v. 14, n. 10, p. 2404, doi. 10.3390/cancers14102404
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- Publication type:
- Article
Type 2 Innate Lymphoid Cells Protect against Colorectal Cancer Progression and Predict Improved Patient Survival.
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- Cancers, 2021, v. 13, n. 3, p. 559, doi. 10.3390/cancers13030559
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- Publication type:
- Article
RMaNI: Regulatory Module Network Inference framework.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S14
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- Publication type:
- Article
Automatic, context-specific generation of Gene Ontology slims.
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- BMC Bioinformatics, 2010, v. 11, p. 498, doi. 10.1186/1471-2105-11-498
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- Publication type:
- Article
Eukaryote-Conserved Methylarginine Is Absent in Diplomonads and Functionally Compensated in Giardia.
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- Molecular Biology & Evolution, 2020, v. 37, n. 12, p. 3525, doi. 10.1093/molbev/msaa186
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- Publication type:
- Article
Basonuclin-2 regulates extracellular matrix production and degradation.
- Published in:
- Life Science Alliance, 2023, v. 6, n. 10, p. 1, doi. 10.26508/lsa.202301984
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- Publication type:
- Article
Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-44489-5
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- Publication type:
- Article
Single‐cell RNA sequencing captures patient‐level heterogeneity and associated molecular phenotypes in breast cancer pleural effusions.
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- Clinical & Translational Medicine, 2023, v. 13, n. 9, p. 1, doi. 10.1002/ctm2.1356
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- Publication type:
- Article
Spatial proteomics identifies a spectrum of immune dysregulation in acquired bone marrow failure syndromes.
- Published in:
- Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1213560
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- Publication type:
- Article
LOCATE: a mouse protein subcellular localization database.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d213, doi. 10.1093/nar/gkj069
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- Publication type:
- Article
Predicting expression: the complementary power of histone modification and transcription factor binding data.
- Published in:
- Epigenetics & Chromatin, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1756-8935-7-36
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- Publication type:
- Article
Extracting reaction networks from databases–opening Pandora’s box.
- Published in:
- Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 973, doi. 10.1093/bib/bbt058
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- Publication type:
- Article
Subcellular Localization of Mammalian Type II Membrane Proteins.
- Published in:
- Traffic, 2006, v. 7, n. 5, p. 613, doi. 10.1111/j.1600-0854.2006.00407.x
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- Publication type:
- Article
Better Than Nothing? Limitations of the Prediction Tool SecretomeP in the Search for Leaderless Secretory Proteins (LSPs) in Plants.
- Published in:
- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.01451
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- Publication type:
- Article
Library size confounds biology in spatial transcriptomics data.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03241-7
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- Publication type:
- Article
Definition and spatial annotation of the dynamic secretome during early kidney development.
- Published in:
- Developmental Dynamics, 2006, v. 235, n. 6, p. 1709
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- Publication type:
- Article
Measuring pathway database coverage of the phosphoproteome.
- Published in:
- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11298
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- Publication type:
- Article
MemO: A Consensus Approach to the Annotation of a Protein's Membrane Organization.
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- In Silico Biology, 2006, v. 6, n. 5, p. 387
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- Publication type:
- Article
standR: spatial transcriptomic analysis for GeoMx DSP data.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 1, p. e2, doi. 10.1093/nar/gkad1026
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- Publication type:
- Article
vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. W1, p. W593, doi. 10.1093/nar/gkad337
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- Publication type:
- Article
Stable gene expression for normalisation and single-sample scoring.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 19, p. e113, doi. 10.1093/nar/gkaa802
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- Publication type:
- Article
Extensive transcriptional responses are co-ordinated by microRNAs as revealed by Exon–Intron Split Analysis (EISA).
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 16, p. 8606, doi. 10.1093/nar/gkz664
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- Publication type:
- Article
Nuclear Receptor Expression in Human Differentiated Thyroid Tumors.
- Published in:
- Thyroid, 2014, v. 24, n. 6, p. 1000, doi. 10.1089/thy.2013.0509
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- Publication type:
- Article
Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01560-x
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- Publication type:
- Article
INsPeCT: INtegrative Platform for Cancer Transcriptomics.
- Published in:
- Cancer Informatics, 2014, n. 13, p. 59, doi. 10.4137/CIN.S13630
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- Publication type:
- Article
Single sample scoring of molecular phenotypes.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2435-4
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- Publication type:
- Article
Differential Use of Signal Peptides and<br /> Membrane Domains Is a Common Occurrence in the Protein Output of Transcriptional Units.
- Published in:
- PLoS Genetics, 2006, v. 2, n. 4, p. e46, doi. 10.1371/journal.pgen.0020046
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- Publication type:
- Article
LSPpred Suite: Tools for Leaderless Secretory Protein Prediction in Plants.
- Published in:
- Plants (2223-7747), 2023, v. 12, n. 7, p. 1428, doi. 10.3390/plants12071428
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- Publication type:
- Article
Molecular insight into targeting the NK cell immune response to cancer.
- Published in:
- Immunology & Cell Biology, 2018, v. 96, n. 5, p. 477, doi. 10.1111/imcb.12045
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- Publication type:
- Article
Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1851-8
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- Publication type:
- Article
Understanding cellular function and disease with comparative pathway analysis.
- Published in:
- Genome Medicine, 2013, v. 5, n. 7, p. 1, doi. 10.1186/gm468
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- Publication type:
- Article
Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets.
- Published in:
- Genome Medicine, 2012, v. 4, n. 5, p. 1, doi. 10.1186/gm340
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- Publication type:
- Article
Stimulus-dependent differences in signalling regulate epithelial-mesenchymal plasticity and change the effects of drugs in breast cancer cell lines.
- Published in:
- Cell Communication & Signaling, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12964-015-0106-x
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- Publication type:
- Article
Network analysis of an in vitro model of androgen-resistance in prostate cancer.
- Published in:
- 2015
- By:
- Publication type:
- journal article
Gene Ontology-driven inference of protein–protein interactions using inducers.
- Published in:
- Bioinformatics, 2012, v. 28, n. 1, p. 69, doi. 10.1093/bioinformatics/btr610
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- Publication type:
- Article