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DeepNull models non-linear covariate effects to improve phenotypic prediction and association power.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27930-0
By:
- McCaw, Zachary R.;
- Colthurst, Thomas;
- Yun, Taedong;
- Furlotte, Nicholas A.;
- Carroll, Andrew;
- Alipanahi, Babak;
- McLean, Cory Y.;
- Hormozdiari, Farhad
Publication type:
Article
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer.
Published in:
Nature Biotechnology, 2023, v. 41, n. 2, p. 232, doi. 10.1038/s41587-022-01435-7
By:
- Baid, Gunjan;
- Cook, Daniel E.;
- Shafin, Kishwar;
- Yun, Taedong;
- Llinares-López, Felipe;
- Berthet, Quentin;
- Belyaeva, Anastasiya;
- Töpfer, Armin;
- Wenger, Aaron M.;
- Rowell, William J.;
- Yang, Howard;
- Kolesnikov, Alexey;
- Ammar, Waleed;
- Vert, Jean-Philippe;
- Vaswani, Ashish;
- McLean, Cory Y.;
- Nattestad, Maria;
- Chang, Pi-Chuan;
- Carroll, Andrew
Publication type:
Article
An open resource for accurately benchmarking small variant and reference calls.
Published in:
Nature Biotechnology, 2019, v. 37, n. 5, p. 561, doi. 10.1038/s41587-019-0074-6
By:
- Zook, Justin M.;
- McDaniel, Jennifer;
- Olson, Nathan D.;
- Wagner, Justin;
- Parikh, Hemang;
- Heaton, Haynes;
- Irvine, Sean A.;
- Trigg, Len;
- Truty, Rebecca;
- McLean, Cory Y.;
- De La Vega, Francisco M.;
- Xiao, Chunlin;
- Sherry, Stephen;
- Salit, Marc
Publication type:
Article
A universal SNP and small-indel variant caller using deep neural networks.
Published in:
Nature Biotechnology, 2018, v. 36, n. 10, p. 983, doi. 10.1038/nbt.4235
By:
- Poplin, Ryan;
- Chang, Pi-Chuan;
- Alexander, David;
- Schwartz, Scott;
- Colthurst, Thomas;
- Ku, Alexander;
- Newburger, Dan;
- Dijamco, Jojo;
- Nguyen, Nam;
- Afshar, Pegah T;
- Gross, Sam S;
- Dorfman, Lizzie;
- McLean, Cory Y;
- DePristo, Mark A
Publication type:
Article
GREAT improves functional interpretation of cis-regulatory regions.
Published in:
Nature Biotechnology, 2010, v. 28, n. 5, p. 495, doi. 10.1038/nbt.1630
By:
- McLean, Cory Y.;
- Bristor, Dave;
- Hiller, Michael;
- Clarke, Shoa L.;
- Schaar, Bruce T.;
- Lowe, Craig B.;
- Wenger, Aaron M.;
- Bejerano, Gill
Publication type:
Article
Accurate, scalable cohort variant calls using DeepVariant and GLnexus.
Published in:
Bioinformatics, 2020, v. 36, n. 24, p. 5582, doi. 10.1093/bioinformatics/btaa1081
By:
- Yun, Taedong;
- Li, Helen;
- Chang, Pi-Chuan;
- Lin, Michael F;
- Carroll, Andrew;
- McLean, Cory Y
Publication type:
Article
A Penile Spine/Vibrissa Enhancer Sequence Is Missing in Modern and Extinct Humans but Is Retained in Multiple Primates with Penile Spines and Sensory Vibrissae.
Published in:
PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0084258
By:
- Reno, Philip L.;
- McLean, Cory Y.;
- Hines, Jasmine E.;
- Capellini, Terence D.;
- Bejerano, Gill;
- Kingsley, David M.
Publication type:
Article
Reducing Pervasive False-Positive Identical-by-Descent Segments Detected by Large-Scale Pedigree Analysis.
Published in:
Molecular Biology & Evolution, 2014, v. 31, n. 8, p. 2212, doi. 10.1093/molbev/msu151
By:
- Durand, Eric Y.;
- Eriksson, Nicholas;
- McLean, Cory Y.
Publication type:
Article
Human-specific loss of regulatory DNA and the evolution of human-specific traits.
Published in:
Nature, 2011, v. 471, n. 7337, p. 216, doi. 10.1038/nature09774
By:
- McLean, Cory Y.;
- Reno, Philip L.;
- Pollen, Alex A.;
- Bassan, Abraham I.;
- Capellini, Terence D.;
- Guenther, Catherine;
- Indjeian, Vahan B.;
- Lim, Xinhong;
- Menke, Douglas B.;
- Schaar, Bruce T.;
- Wenger, Aaron M.;
- Bejerano, Gill;
- Kingsley, David M.
Publication type:
Article
Quantifying prion disease penetrance using large population control cohorts.
Published in:
Science Translational Medicine, 2016, v. 8, n. 322, p. 1, doi. 10.1126/scitranslmed.aad5169
By:
- Minikel, Eric Vallabh;
- Vallabh, Sonia M.;
- Monkol Lek;
- Estrada, Karol;
- Samocha, Kaitlin E.;
- Sathirapongsasuti, J. Fah;
- McLean, Cory Y.;
- Tung, Joyce Y.;
- Yu, Linda P. C.;
- Gambetti, Pierluigi;
- Blevins, Janis;
- Shulin Zhang;
- Yvonne Cohen;
- Wei Chen;
- Masahito Yamada;
- Tsuyoshi Hamaguchi;
- Nobuo Sanjo;
- Hidehiro Mizusawa;
- Yosikazu Nakamura;
- Tetsuyuki Kitamoto
Publication type:
Article
Longitudinal fundus imaging and its genome- wide association analysis provide evidence for a human retinal aging clock.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.82364
By:
- Ahadi, Sara;
- Wilson, Kenneth A.;
- Babenko, Boris;
- McLean, Cory Y.;
- Bryant, Drew;
- Pritchard, Orion;
- Carrera, Ajay KumarEnrique M.;
- Lamy, Ricardo;
- Stewart, Jay M.;
- Varadarajan, Avinash;
- Bernd, Marc;
- Kapahi, Pankaj;
- Bashir, Ali
Publication type:
Article
GenomeWarp: an alignment-based variant coordinate transformation.
Published in:
Bioinformatics, 2019, v. 35, n. 21, p. 4389, doi. 10.1093/bioinformatics/btz218
By:
- McLean, Cory Y;
- Hwang, Yeongwoo;
- Poplin, Ryan;
- DePristo, Mark A
Publication type:
Article

Found: 12