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Identification of genomic regions associated with resistance to blackleg (Leptosphaeria maculans) in canola using genome wide association study.
Published in:
European Journal of Plant Pathology, 2021, v. 161, n. 3, p. 693, doi. 10.1007/s10658-021-02354-0
By:
- Mansouripour, Seyedmojtaba;
- Oladzad, Atena;
- Shahoveisi, Fereshteh;
- Rahman, Md. Mukhlesur;
- del Río Mendoza, Luis E.;
- Mamidi, Sujan;
- Moghaddam, Samira Mafi
Publication type:
Article
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24328-w
By:
- Lovell, John T.;
- Bentley, Nolan B.;
- Bhattarai, Gaurab;
- Jenkins, Jerry W.;
- Sreedasyam, Avinash;
- Alarcon, Yanina;
- Bock, Clive;
- Boston, Lori Beth;
- Carlson, Joseph;
- Cervantes, Kimberly;
- Clermont, Kristen;
- Duke, Sara;
- Krom, Nick;
- Kubenka, Keith;
- Mamidi, Sujan;
- Mattison, Christopher P.;
- Monteros, Maria J.;
- Pisani, Cristina;
- Plott, Christopher;
- Rajasekar, Shanmugam
Publication type:
Article
The tepary bean genome provides insight into evolution and domestication under heat stress.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22858-x
By:
- Moghaddam, Samira Mafi;
- Oladzad, Atena;
- Koh, Chushin;
- Ramsay, Larissa;
- Hart, John P.;
- Mamidi, Sujan;
- Hoopes, Genevieve;
- Sreedasyam, Avinash;
- Wiersma, Andrew;
- Zhao, Dongyan;
- Grimwood, Jane;
- Hamilton, John P.;
- Jenkins, Jerry;
- Vaillancourt, Brieanne;
- Wood, Joshua C.;
- Schmutz, Jeremy;
- Kagale, Sateesh;
- Porch, Timothy;
- Bett, Kirstin E.;
- Buell, C. Robin
Publication type:
Article
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.
Published in:
Nature Biotechnology, 2020, v. 38, n. 10, p. 1203, doi. 10.1038/s41587-020-0681-2
By:
- Mamidi, Sujan;
- Healey, Adam;
- Huang, Pu;
- Grimwood, Jane;
- Jenkins, Jerry;
- Barry, Kerrie;
- Sreedasyam, Avinash;
- Shu, Shengqiang;
- Lovell, John T.;
- Feldman, Maximilian;
- Wu, Jinxia;
- Yu, Yunqing;
- Chen, Cindy;
- Johnson, Jenifer;
- Sakakibara, Hitoshi;
- Kiba, Takatoshi;
- Sakurai, Tetsuya;
- Tavares, Rachel;
- Nusinow, Dmitri A.;
- Baxter, Ivan
Publication type:
Article
A reference genome for common bean and genome-wide analysis of dual domestications.
Published in:
Nature Genetics, 2014, v. 46, n. 7, p. 707, doi. 10.1038/ng.3008
By:
- Schmutz, Jeremy;
- McClean, Phillip E;
- Mamidi, Sujan;
- Wu, G Albert;
- Cannon, Steven B;
- Grimwood, Jane;
- Jenkins, Jerry;
- Shu, Shengqiang;
- Song, Qijian;
- Chavarro, Carolina;
- Torres-Torres, Mirayda;
- Geffroy, Valerie;
- Moghaddam, Samira Mafi;
- Gao, Dongying;
- Abernathy, Brian;
- Barry, Kerrie;
- Blair, Matthew;
- Brick, Mark A;
- Chovatia, Mansi;
- Gepts, Paul
Publication type:
Article
Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping.
Published in:
Plant Genome, 2021, v. 14, n. 2, p. 1, doi. 10.1002/tpg2.20110
By:
- Li, Huang;
- Hu, Xiao;
- Lovell, John T.;
- Grabowski, Paul P.;
- Mamidi, Sujan;
- Chen, Cindy;
- Amirebrahimi, Mojgan;
- Kahanda, Indika;
- Mumey, Brendan;
- Barry, Kerrie;
- Kudrna, David;
- Schmutz, Jeremy;
- Lachowiec, Jennifer;
- Lu, Chaofu
Publication type:
Article
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02162-5
By:
- Hofmeister, Brigitte T.;
- Denkena, Johanna;
- Colomé-Tatché, Maria;
- Shahryary, Yadollah;
- Hazarika, Rashmi;
- Grimwood, Jane;
- Mamidi, Sujan;
- Jenkins, Jerry;
- Grabowski, Paul P.;
- Sreedasyam, Avinash;
- Shu, Shengqiang;
- Barry, Kerrie;
- Lail, Kathleen;
- Adam, Catherine;
- Lipzen, Anna;
- Sorek, Rotem;
- Kudrna, Dave;
- Talag, Jayson;
- Wing, Rod;
- Hall, David W.
Publication type:
Article
Genome-Wide Association Mapping for Resistance to Leaf and Stripe Rust in Winter-Habit Hexaploid Wheat Landraces.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129580
By:
- Kertho, Albert;
- Mamidi, Sujan;
- Bonman, J. Michael;
- McClean, Phillip E.;
- Acevedo, Maricelis
Publication type:
Article
Genome-Wide Association Study Reveals Novel Quantitative Trait Loci Associated with Resistance to Multiple Leaf Spot Diseases of Spring Wheat.
Published in:
PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0108179
By:
- Gurung, Suraj;
- Mamidi, Sujan;
- Bonman, J. Michael;
- Xiong, Mai;
- Brown-Guedira, Gina;
- Adhikari, Tika B.
Publication type:
Article
Genome-Wide Association Studies Identifies Seven Major Regions Responsible for Iron Deficiency Chlorosis in Soybean (Glycine max).
Published in:
PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107469
By:
- Mamidi, Sujan;
- Lee, Rian K.;
- Goos, Jay R.;
- McClean, Phillip E.
Publication type:
Article
Identification of QTL in Spring Wheat Associated with Resistance to a Novel Isolate of Pyrenophora tritici-repentis.
Published in:
Crop Science, 2013, v. 53, n. 3, p. 842, doi. 10.2135/cropsci2012.01.0036
By:
- Patel, Jaimin S.;
- Mamidi, Sujan;
- Bonman, J. Michael;
- Adhikari, Tika B.
Publication type:
Article
The genomic landscape of molecular responses to natural drought stress in Panicum hallii.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07669-x
By:
- Lovell, John T.;
- Jenkins, Jerry;
- Lowry, David B.;
- Mamidi, Sujan;
- Sreedasyam, Avinash;
- Weng, Xiaoyu;
- Barry, Kerrie;
- Bonnette, Jason;
- Campitelli, Brandon;
- Daum, Chris;
- Gordon, Sean P.;
- Gould, Billie A.;
- Khasanova, Albina;
- Lipzen, Anna;
- MacQueen, Alice;
- Palacio-Mejía, Juan Diego;
- Plott, Christopher;
- Shakirov, Eugene V.;
- Shu, Shengqiang;
- Yoshinaga, Yuko
Publication type:
Article
Genomic prediction of switchgrass winter survivorship across diverse lowland populations.
Published in:
G3: Genes | Genomes | Genetics, 2023, v. 13, n. 3, p. 1, doi. 10.1093/g3journal/jkad014
By:
- Tilhou, Neal W.;
- Poudel, Hari P.;
- Lovell, John;
- Mamidi, Sujan;
- Schmutz, Jeremy;
- Daum, Christopher;
- Zane, Matthew;
- Yuko Yoshinaga;
- Lipzen, Anna;
- Casler, Michael D.
Publication type:
Article
Population structure and linkage disequilibrium in Lupinus albus L. germplasm and its implication for association mapping.
Published in:
Theoretical & Applied Genetics, 2012, v. 125, n. 3, p. 517, doi. 10.1007/s00122-012-1850-6
By:
- Iqbal, Muhammad;
- Mamidi, Sujan;
- Ahsan, Rubina;
- Kianian, Shahryar;
- Coyne, Clarice;
- Hamama, Anwar;
- Narina, Satya;
- Bhardwaj, Harbans
Publication type:
Article
Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean ( Phaseolus vulgaris L.).
Published in:
Theoretical & Applied Genetics, 2010, v. 121, n. 6, p. 1103, doi. 10.1007/s00122-010-1375-9
By:
- McConnell, Melody;
- Mamidi, Sujan;
- Lee, Rian;
- Chikara, Shireen;
- Rossi, Monica;
- Papa, Roberto;
- McClean, Phillip
Publication type:
Article
Genetic Diversity and Population Structure Among Pea ( Pisum sativum L.) Cultivars as Revealed by Simple Sequence Repeat and Novel Genic Markers.
Published in:
Molecular Biotechnology, 2014, v. 56, n. 10, p. 925, doi. 10.1007/s12033-014-9772-y
By:
- Jain, Shalu;
- Kumar, Ajay;
- Mamidi, Sujan;
- McPhee, Kevin
Publication type:
Article
Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data.
Published in:
Functional Plant Biology, 2011, v. 38, n. 12, p. 5, doi. 10.1071/FP11124
By:
- Mamidi, Sujan;
- Rossi, Monica;
- Annam, Deepti;
- Moghaddam, Samira;
- Lee, Rian;
- Papa, Roberto;
- McClean, Phillip
Publication type:
Article
Identification of loci associated with water use efficiency and symbiotic nitrogen fixation in soybean.
Published in:
Frontiers in Plant Science, 2023, p. 01, doi. 10.3389/fpls.2023.1271849
By:
- Arifuzzaman, Muhammad;
- Mamidi, Sujan;
- Sanz-Saez, Alvaro;
- Zakeri, Hossein;
- Scaboo, Andrew;
- Fritschi, Felix B.
Publication type:
Article
Linked candidate genes of different functions for white mold resistance in common bean (Phaseolus vulgaris L) are identified by multiple QTL mapping approaches.
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1233285
By:
- Oladzad, Atena;
- Roy, Jayanta;
- Mamidi, Sujan;
- Miklas, Phillip N.;
- Lee, Rian;
- Clevenger, Josh;
- Myers, Zachary;
- Korani, Walid;
- McClean, Phillip E.
Publication type:
Article
Genetic Architecture of Flooding Tolerance in the Dry Bean Middle-American Diversity Panel.
Published in:
Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01183
By:
- Soltani, Ali;
- MafiMoghaddam, Samira;
- Walter, Katelynn;
- Restrepo-Montoya, Daniel;
- Mamidi, Sujan;
- Schroder, Stephan;
- Lee, Rian;
- McClean, Phillip E.;
- Osorno, Juan M.
Publication type:
Article
Parallel tuning of semi‐dwarfism via differential splicing of Brachytic1 in commercial maize and smallholder sorghum.
Published in:
New Phytologist, 2023, v. 240, n. 5, p. 1930, doi. 10.1111/nph.19273
By:
- Jiao, Shuping;
- Mamidi, Sujan;
- Chamberlin, Mark A.;
- Beatty, Mary;
- Thatcher, Shawn;
- Simcox, Kevin D.;
- Maina, Fanna;
- Wang‐Nan, Hu;
- Johal, Gurmukh S.;
- Heetland, Lynn;
- Marla, Sandeep R.;
- Meeley, Robert B.;
- Schmutz, Jeremy;
- Morris, Geoffrey P.;
- Multani, Dilbag S.
Publication type:
Article
Genetic Analysis of Flooding Tolerance in an Andean Diversity Panel of Dry Bean (Phaseolus vulgaris L.).
Published in:
Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2018.00767
By:
- Soltani, Ali;
- MafiMoghaddam, Samira;
- Oladzad-Abbasabadi, Atena;
- Walter, Katelynn;
- Kearns, Patrick J.;
- Vasquez-Guzman, Jose;
- Mamidi, Sujan;
- Lee, Rian;
- Shade, Ashley L.;
- Jacobs, Janette L.;
- Chilivers, Martin I.;
- Lowry, David B.;
- McClean, Phillip;
- Osorno, Juan M.
Publication type:
Article
Identification and validation of a major cadmium accumulation locus and closely associated SNP markers in North Dakota durum wheat cultivars.
Published in:
Molecular Breeding, 2016, v. 36, n. 8, p. 1, doi. 10.1007/s11032-016-0536-1
By:
- AbuHammad, Wesam A.;
- Mamidi, Sujan;
- Kumar, Ajay;
- Pirseyedi, Seyed;
- Manthey, Frank A.;
- Kianian, Shahryar F.;
- Alamri, Mohammed S.;
- Mergoum, Mohamed;
- Elias, Elias M.
Publication type:
Article
Association mapping in Brassica napus (L.) accessions identifies a major QTL for blackleg disease resistance on chromosome A01.
Published in:
Molecular Breeding, 2016, v. 36, n. 7, p. 1, doi. 10.1007/s11032-016-0513-8
By:
- Rahman, Mukhlesur;
- Mamidi, Sujan;
- del Rio, Luis;
- Ross, Andrew;
- Kadir, Md Manjurul;
- Rahaman, Md Mizanur;
- Arifuzzaman, Muhammad
Publication type:
Article
Optimization of genotyping by sequencing (GBS) data in common bean ( Phaseolus vulgaris L.).
Published in:
Molecular Breeding, 2016, v. 36, n. 1, p. 1, doi. 10.1007/s11032-015-0431-1
By:
- Schröder, Stephan;
- Mamidi, Sujan;
- Lee, Rian;
- McKain, Michael;
- McClean, Phillip;
- Osorno, Juan
Publication type:
Article
Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae).
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5179-7
By:
- Gould, Billie A.;
- Palacio-Mejia, Juan Diego;
- Jenkins, Jerry;
- Mamidi, Sujan;
- Barry, Kerrie;
- Schmutz, Jeremy;
- Juenger, Thomas E.;
- Lowry, David B.
Publication type:
Article
Genome-wide association studies revealed novel stripe rust resistance QTL in barley at seedling and adult-plant stages.
Published in:
Euphytica, 2021, v. 217, n. 1, p. 1, doi. 10.1007/s10681-020-02728-1
By:
- Gyawali, Sanjaya;
- Mamidi, Sujan;
- Chao, Shiaoman;
- Bhardwaj, Subhash C.;
- Shekhawat, Pradeep S.;
- Selvakumar, Rajan;
- Gangwar, Om P.;
- Verma, Ramesh Pal Singh
Publication type:
Article
Genetic dissection of Fusarium head blight resistance in spring wheat cv. 'Glenn'.
Published in:
Euphytica, 2020, v. 216, n. 5, p. 1, doi. 10.1007/s10681-020-02610-0
By:
- ElDoliefy, Ahmed ElFatih A.;
- Kumar, Ajay;
- Anderson, James A.;
- Glover, Karl D.;
- Mamidi, Sujan;
- Elias, Elias M.;
- Seetan, Raed;
- Alamri, Mohammed S.;
- Kianian, Shahryar F.;
- Sapkota, Suraj;
- Green, Andrew;
- Mergoum, Mohamed
Publication type:
Article
Mapping of new quantitative trait loci (QTL) for resistance to Septoria tritici blotch in spring wheat ( Triticum aestivum L.).
Published in:
Euphytica, 2015, v. 205, n. 3, p. 699, doi. 10.1007/s10681-015-1393-4
By:
- Adhikari, Tika;
- Mamidi, Sujan;
- Gurung, Suraj;
- Bonman, John
Publication type:
Article
A Genome-Wide Association Study Identifying Single-Nucleotide Polymorphisms for Iron and Zinc Biofortification in a Worldwide Barley Collection.
Published in:
Plants (2223-7747), 2022, v. 11, n. 10, p. 1349, doi. 10.3390/plants11101349
By:
- Nyiraguhirwa, Solange;
- Grana, Zahra;
- Ouabbou, Hassan;
- Iraqi, Driss;
- Ibriz, Mohammed;
- Mamidi, Sujan;
- Udupa, Sripada M.
Publication type:
Article
White seed color in common bean (Phaseolus vulgaris) results from convergent evolution in the P (pigment) gene.
Published in:
New Phytologist, 2018, v. 219, n. 3, p. 1112, doi. 10.1111/nph.15259
By:
- McClean, Phillip E.;
- Bett, Kirstin E.;
- Stonehouse, Robert;
- Lee, Rian;
- Pflieger, Stephanie;
- Moghaddam, Samira Mafi;
- Geffroy, Valerie;
- Miklas, Phil;
- Mamidi, Sujan
Publication type:
Article
Quantitative trait loci mapping of seed colour, hairy leaf, seedling anthocyanin, leaf chlorosis and days to flowering in F<sub>2</sub> population of Brassica rapa L.
Published in:
Plant Breeding, 2014, v. 133, n. 3, p. 381, doi. 10.1111/pbr.12165
By:
- Rahman, Mukhlesur;
- Mamidi, Sujan;
- McClean, Phillip;
- Chevre, A.‐M.
Publication type:
Article
Synteny mapping between common bean andsoybean reveals extensive blocks of shared loci.
Published in:
BMC Genomics, 2010, v. 11, p. 184, doi. 10.1186/1471-2164-11-184
By:
- McClean, Phillip E.;
- Mamidi, Sujan;
- McConnell, Melody;
- Chikara, Shireen;
- Lee, Rian
Publication type:
Article
Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.
Published in:
Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00185
By:
- Samira Mafi Moghaddam;
- Qijian Song;
- Sujan Mamidi;
- Schmutz, Jeremy;
- Lee, Rian;
- Cregan, Perry;
- Osorno, Juan M.;
- McClean, Phillip E.
Publication type:
Article
Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.
Published in:
Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00185
By:
- Moghaddam, Samira Mafi;
- Qijian Song;
- Mamidi, Sujan;
- Schmutz, Jeremy;
- Lee, Rian;
- Cregan, Perry;
- Osorno, Juan M.;
- McClean, Phillip E.
Publication type:
Article
Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.
Published in:
Frontiers in Plant Science, 2013, v. 4, p. 1, doi. 10.3389/fpls.2014.00185
By:
- Moghaddam, Samira Mafi;
- Song, Qijian;
- Mamidi, Sujan;
- Schmutz, Jeremy;
- Lee, Rian;
- Cregan, Perry;
- Osorno, Juan M.;
- McClean, Phillip E.
Publication type:
Article

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