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- Title
Chromosome-Level Assembly of the Chinese Hooksnout Carp (Opsariichthys bidens) Genome Using PacBio Sequencing and Hi-C Technology.
- Authors
Xu, Xiaojun; Guan, Wenzhi; Niu, Baolong; Guo, Dandan; Xie, Qing-Ping; Zhan, Wei; Yi, Shaokui; Lou, Bao
- Abstract
The chromosomes of I O. bidens i exhibited high homology with the zebrafish chromosomes, and several chromosomes of zebrafish were corresponding to two mini chromosomes of I O. bidens, i indicating that the large number of chromosome of I O. bidens i may originated from the chromosomal break of ancestral chromosomes. To further evaluate the quality of genome assembly, we compared I O. bidens i genome with zebrafish genome. The estimated genome size of I O. bidens i is about 899.69 Mb, and the heterozygous rate of genome was 0.36%. Keywords: Opsariichthys bidens; PacBio sequencing; Hi-C technology; chromosome-level assembly; Opsariichthyinae EN Opsariichthys bidens PacBio sequencing Hi-C technology chromosome-level assembly Opsariichthyinae 1 6 6 01/24/22 20220119 NES 220119 Introduction Chinese hooksnout carp ( I Opsariichthys bidens i ) is an endemic Cypriniformes minnow in East Asia, and mainly distributed in China.
- Subjects
CARP; NUCLEOTIDE sequencing; EUKARYOTIC genomes; GENE families
- Publication
Frontiers in Genetics, 2022, Vol 12, p1
- ISSN
1664-8021
- Publication type
Article
- DOI
10.3389/fgene.2021.788547