OpenURL Connection Search

Select item for more details and to access through your institution.

PAK1 mediates pancreatic cancer cell migration and resistance to MET inhibition.
Published in:
Journal of Pathology, 2014, v. 234, n. 4, p. 502, doi. 10.1002/path.4412
By:
- Zhou, Wei;
- Jubb, Adrian M;
- Lyle, Karen;
- Xiao, Qian;
- Ong, Christy C;
- Desai, Rupal;
- Fu, Ling;
- Gnad, Florian;
- Song, Qinghua;
- Haverty, Peter M;
- Aust, Daniela;
- Grützmann, Robert;
- Romero, Mally;
- Totpal, Klara;
- Neve, Richard M;
- Yan, Yibing;
- Forrest, William F;
- Wang, Yulei;
- Raja, Rajiv;
- Pilarsky, Christian
Publication type:
Article
A comprehensive transcriptional portrait of human cancer cell lines.
Published in:
Nature Biotechnology, 2015, v. 33, n. 3, p. 306, doi. 10.1038/nbt.3080
By:
- Klijn, Christiaan;
- Durinck, Steffen;
- Stawiski, Eric W;
- Haverty, Peter M;
- Jiang, Zhaoshi;
- Liu, Hanbin;
- Degenhardt, Jeremiah;
- Mayba, Oleg;
- Gnad, Florian;
- Liu, Jinfeng;
- Pau, Gregoire;
- Reeder, Jens;
- Cao, Yi;
- Mukhyala, Kiran;
- Selvaraj, Suresh K;
- Yu, Mamie;
- Zynda, Gregory J;
- Brauer, Matthew J;
- Wu, Thomas D;
- Gentleman, Robert C
Publication type:
Article
Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer.
Published in:
Nature Genetics, 2012, v. 44, n. 10, p. 1111, doi. 10.1038/ng.2405
By:
- Rudin, Charles M;
- Durinck, Steffen;
- Stawiski, Eric W;
- Poirier, John T;
- Modrusan, Zora;
- Shames, David S;
- Bergbower, Emily A;
- Guan, Yinghui;
- Shin, James;
- Guillory, Joseph;
- Rivers, Celina Sanchez;
- Foo, Catherine K;
- Bhatt, Deepali;
- Stinson, Jeremy;
- Gnad, Florian;
- Haverty, Peter M;
- Gentleman, Robert;
- Chaudhuri, Subhra;
- Janakiraman, Vasantharajan;
- Jaiswal, Bijay S
Publication type:
Article
Human Biosample Authentication Using the High-Throughput, Cost-Effective SNPtrace<sup>TM</sup> System.
Published in:
PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0116218
By:
- Liang-Chu, May M. Y.;
- Yu, Mamie;
- Haverty, Peter M.;
- Koeman, Julie;
- Ziegle, Janet;
- Lee, Marie;
- Bourgon, Richard;
- Neve, Richard M.
Publication type:
Article
Active PI3K Pathway Causes an Invasive Phenotype Which Can Be Reversed or Promoted by Blocking the Pathway at Divergent Nodes.
Published in:
PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036402
By:
- Wallin, Jeffrey J.;
- Guan, Jane;
- Edgar, Kyle A.;
- Wei Zhou;
- Francis, Ross;
- Torres, Anthony C.;
- Haverty, Peter M.;
- Eastham-Anderson, Jeffrey;
- Arena, Sabrina;
- Bardelli, Alberto;
- Griffin, Sue;
- Goodall, John E.;
- Grimshaw, Kyla M.;
- Hoeflich, Klaus P.;
- Torrance, Christopher;
- Belvin, Marcia;
- Friedman, Lori S.
Publication type:
Article
Transposable element expression in tumors is associated with immune infiltration and increased antigenicity.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13035-2
By:
- Kong, Yu;
- Rose, Christopher M.;
- Cass, Ashley A.;
- Williams, Alexander G.;
- Darwish, Martine;
- Lianoglou, Steve;
- Haverty, Peter M.;
- Tong, Ann-Jay;
- Blanchette, Craig;
- Albert, Matthew L.;
- Mellman, Ira;
- Bourgon, Richard;
- Greally, John;
- Jhunjhunwala, Suchit;
- Chen-Harris, Haiyin
Publication type:
Article
Diverse somatic mutation patterns and pathway alterations in human cancers.
Published in:
Nature, 2010, v. 466, n. 7308, p. 869, doi. 10.1038/nature09208
By:
- Zhengyan Kan;
- Jaiswal, Bijay S.;
- Stinson, Jeremy;
- Janakiraman, Vasantharajan;
- Bhatt, Deepali;
- Stern, Howard M.;
- Peng Yue;
- Haverty, Peter M.;
- Bourgon, Richard;
- Jianbiao Zheng;
- Moorhead, Martin;
- Chaudhuri, Subhra;
- Tomsho, Lynn P.;
- Peters, Brock A.;
- Pujara, Kanan;
- Cordes, Shaun;
- Davis, David P.;
- Carlton, Victoria E. H.;
- Wenlin Yuan;
- Li Li
Publication type:
Article
The mutation spectrum revealed by paired genome sequences from a lung cancer patient.
Published in:
Nature, 2010, v. 465, n. 7297, p. 473, doi. 10.1038/nature09004
By:
- Lee, William;
- Jiang, Zhaoshi;
- Liu, Jinfeng;
- Haverty, Peter M.;
- Guan, Yinghui;
- Stinson, Jeremy;
- Yue, Peng;
- Zhang, Yan;
- Pant, Krishna P.;
- Bhatt, Deepali;
- Ha, Connie;
- Johnson, Stephanie;
- Kennemer, Michael I.;
- Mohan, Sankar;
- Nazarenko, Igor;
- Watanabe, Colin;
- Sparks, Andrew B.;
- Shames, David S.;
- Gentleman, Robert;
- de Sauvage, Frederic J.
Publication type:
Article
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
Published in:
Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w213, doi. 10.1093/nar/gkh402
By:
- Haverty, Peter M.;
- Frith, Martin C.;
- Weng, Zhiping
Publication type:
Article
MotifViz: an analysis and visualization tool for motif discovery.
Published in:
Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w420
By:
- Fu, Yutao;
- Frith, Martin C.;
- Haverty, Peter M.;
- Weng, Zhiping
Publication type:
Article
Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 1, p. 179, doi. 10.1093/nar/gkh183
By:
- Haverty, Peter M.;
- Hansen, Ulla;
- Weng, Zhiping
Publication type:
Article
HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues.
Published in:
Nucleic Acids Research, 2002, v. 30, n. 1, p. 214, doi. 10.1093/nar/30.1.214
By:
- Haverty, Peter M.;
- Weng, Zhiping;
- Best, Nathan L.;
- Auerbach, Kenneth R.;
- Hsiao, Li-Li;
- Jensen, Roderick V.;
- Gullans, Steven R.
Publication type:
Article
Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics.
Published in:
Arthritis Research & Therapy, 2014, v. 16, n. 2, p. R90, doi. 10.1186/ar4555
By:
- Dennis Jr., Glynn;
- Holweg, Cécile T. J.;
- Kummerfeld, Sarah K.;
- Choy, David F.;
- Setiadi, A. Francesca;
- Hackney, Jason A.;
- Haverty, Peter M.;
- Gilbert, Houston;
- Wei Yu Lin;
- Diehl, Lauri;
- Fischer, S. Fische;
- Song, An;
- Musselman, David;
- Klearman, Micki;
- Gabay, Cem;
- Kavanaugh, Arthur;
- Endres, Judith;
- Fox, David A.;
- Martin, Flavius;
- Townsend, Michael J.
Publication type:
Article
Super-enhancer acquisition drives oncogene expression in triple negative breast cancer.
Published in:
PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0235343
By:
- Raisner, Ryan;
- Bainer, Russell;
- Haverty, Peter M.;
- Benedetti, Kelli L.;
- Gascoigne, Karen E.
Publication type:
Article
High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors.
Published in:
BMC Medical Genomics, 2009, v. 2, p. 1, doi. 10.1186/1755-8794-2-21
By:
- Haverty, Peter M.;
- Hon, Lawrence S.;
- Kaminker, Joshua S.;
- Chant, John;
- Zemin Zhang
Publication type:
Article
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer.
Published in:
Nature Communications, 2014, v. 5, n. 5, p. 3830, doi. 10.1038/ncomms4830
By:
- Liu, Jinfeng;
- McCleland, Mark;
- Stawiski, Eric W.;
- Gnad, Florian;
- Mayba, Oleg;
- Haverty, Peter M.;
- Durinck, Steffen;
- Chen, Ying-Jiun;
- Klijn, Christiaan;
- Jhunjhunwala, Suchit;
- Lawrence, Michael;
- Liu, Hanbin;
- Wan, Yinan;
- Chopra, Vivek;
- Yaylaoglu, Murat B.;
- Yuan, Wenlin;
- Ha, Connie;
- Gilbert, Houston N.;
- Reeder, Jens;
- Pau, Gregoire
Publication type:
Article
MBASED: allele-specific expression detection in cancer tissues and cell lines.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 405, doi. 10.1186/s13059-014-0405-3
By:
- Mayba, Oleg;
- Gilbert, Houston N.;
- Jinfeng Liu;
- Haverty, Peter M.;
- Jhunjhunwala, Suchit;
- Zhaoshi Jiang;
- Watanabe, Colin;
- Zemin Zhang
Publication type:
Article
A transcriptional MAPK Pathway Activity Score (MPAS) is a clinically relevant biomarker in multiple cancer types.
Published in:
NPJ Precision Oncology, 2018, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41698-018-0051-4
By:
- Wagle, Marie-Claire;
- Kirouac, Daniel;
- Klijn, Christiaan;
- Liu, Bonnie;
- Mahajan, Shilpi;
- Junttila, Melissa;
- Moffat, John;
- Merchant, Mark;
- Huw, Ling;
- Wongchenko, Matthew;
- Okrah, Kwame;
- Srinivasan, Shrividhya;
- Mounir, Zineb;
- Sumiyoshi, Teiko;
- Haverty, Peter M.;
- Yauch, Robert L.;
- Yan, Yibing;
- Kabbarah, Omar;
- Hampton, Garret;
- Amler, Lukas
Publication type:
Article
High-resolution genomic and expression analyses of copy number alterations in breast tumors.
Published in:
Genes, Chromosomes & Cancer, 2008, v. 47, n. 6, p. 530, doi. 10.1002/gcc.20558
By:
- Haverty, Peter M.;
- Fridlyand, Jane;
- Li, Li;
- Getz, Gad;
- Beroukhim, Rameen;
- Lohr, Scott;
- Wu, Thomas D.;
- Cavet, Guy;
- Zhang, Zemin;
- Chant, John
Publication type:
Article
Recurrent R-spondin fusions in colon cancer.
Published in:
Nature, 2012, v. 488, n. 7413, p. 660, doi. 10.1038/nature11282
By:
- Seshagiri, Somasekar;
- Stawiski, Eric W.;
- Durinck, Steffen;
- Modrusan, Zora;
- Storm, Elaine E.;
- Conboy, Caitlin B.;
- Chaudhuri, Subhra;
- Guan, Yinghui;
- Janakiraman, Vasantharajan;
- Jaiswal, Bijay S.;
- Guillory, Joseph;
- Ha, Connie;
- Dijkgraaf, Gerrit J. P.;
- Stinson, Jeremy;
- Gnad, Florian;
- Huntley, Melanie A.;
- Degenhardt, Jeremiah D.;
- Haverty, Peter M.;
- Bourgon, Richard;
- Wang, Weiru
Publication type:
Article
Limited agreement among three global gene expression methods highlights the requirement for non-global validation.
Published in:
Bioinformatics, 2004, v. 20, n. 18, p. 3431, doi. 10.1093/bioinformatics/bth421
By:
- Haverty, Peter M.;
- Hsiao, Li-Li;
- Gullans, Steven R.;
- Hansen, Ulla;
- Weng, Zhiping
Publication type:
Article
CisML: an XML-based format for sequence motif detection software.
Published in:
Bioinformatics, 2004, v. 20, n. 11, p. 1815, doi. 10.1093/bioinformatics/bth162
By:
- Peter M. Haverty;
- Zhiping Weng
Publication type:
Article
Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1621-7
By:
- Fortin, Jean-Philippe;
- Tan, Jenille;
- Gascoigne, Karen E.;
- Haverty, Peter M.;
- Forrest, William F.;
- Costa, Michael R.;
- Martin, Scott E.
Publication type:
Article
Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-440
By:
- Tae Hyun Hwang;
- Gowtham Atluri;
- Rui Kuang;
- Kumar, Vipin;
- Starr, Timothy;
- Silverstein, Kevin A.T.;
- Haverty, Peter M.;
- Zemin Zhang;
- Jinfeng Liu
Publication type:
Article
P21-Activated Kinase 1 (PAK1) as a Therapeutic Target in BRAF Wild-Type Melanoma.
Published in:
JNCI: Journal of the National Cancer Institute, 2013, v. 105, n. 9, p. 606, doi. 10.1093/jnci/djt054
By:
- Ong, Christy C.;
- Jubb, Adrian M.;
- Jakubiak, Diana;
- Zhou, Wei;
- Rudolph, Joachim;
- Haverty, Peter M.;
- Kowanetz, Marcin;
- Yan, Yibing;
- Tremayne, Jarrod;
- Lisle, Richard;
- Harris, Adrian L.;
- Friedman, Lori S.;
- Belvin, Marcia;
- Middleton, Mark R.;
- Blackwood, Elizabeth M.;
- Koeppen, Hartmut;
- Hoeflich, Klaus P.
Publication type:
Article
Correction: Combined MEK and ERK inhibition overcomes therapy-mediated pathway reactivation in RAS mutant tumors.
Published in:
2018
By:
- Merchant, Mark;
- Moffat, John;
- Schaefer, Gabriele;
- Chan, Jocelyn;
- Wang, Xi;
- Orr, Christine;
- Cheng, Jason;
- Hunsaker, Thomas;
- Shao, Lily;
- Wang, Stephanie J.;
- Wagle, Marie-Claire;
- Lin, Eva;
- Haverty, Peter M.;
- Shahidi-Latham, Sheerin;
- Ngu, Hai;
- Solon, Margaret;
- Eastham-Anderson, Jeffrey;
- Koeppen, Hartmut;
- Huang, Shih-Min A.;
- Schwarz, Jacob
Publication type:
Correction Notice
Combined MEK and ERK inhibition overcomes therapy-mediated pathway reactivation in RAS mutant tumors.
Published in:
PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0185862
By:
- Merchant, Mark;
- Moffat, John;
- Schaefer, Gabriele;
- Chan, Jocelyn;
- Wang, Xi;
- Orr, Christine;
- Cheng, Jason;
- Hunsaker, Thomas;
- Shao, Lily;
- Wang, Stephanie J.;
- Wagle, Marie-Claire;
- Lin, Eva;
- Haverty, Peter M.;
- Shahidi-Latham, Sheerin;
- Ngu, Hai;
- Solon, Margaret;
- Eastham-Anderson, Jeffrey;
- Koeppen, Hartmut;
- Huang, Shih-Min A.;
- Schwarz, Jacob
Publication type:
Article

Found: 27