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An empirical Bayes approach for multiple tissue eQTL analysis.
Published in:
2018
By:
- Li, Gen;
- Shabalin, Andrey A;
- Rusyn, Ivan;
- Wright, Fred A;
- Nobel, Andrew B
Publication type:
journal article
Suicide and Psychosis: Results From a Population-Based Cohort of Suicide Death (N = 4380).
Published in:
Schizophrenia Bulletin, 2022, v. 48, n. 2, p. 457, doi. 10.1093/schbul/sbab113
By:
- Docherty, Anna R;
- Bakian, Amanda V;
- DiBlasi, Emily;
- Shabalin, Andrey A;
- Chen, Danli;
- Keeshin, Brooks;
- Monson, Eric;
- Christensen, Erik D;
- Li, Qingqin;
- Gray, Douglas;
- Coon, Hilary
Publication type:
Article
Molecular Genetic Risk for Psychosis Is Associated With Psychosis Risk Symptoms in a Population-Based UK Cohort: Findings From Generation Scotland.
Published in:
Schizophrenia Bulletin, 2020, v. 46, n. 5, p. 1045, doi. 10.1093/schbul/sbaa042
By:
- Docherty, Anna R;
- Shabalin, Andrey A;
- Adkins, Daniel E;
- Mann, Frank;
- Krueger, Robert F;
- Bacanu, Silviu-Alin;
- Campbell, Archie;
- Hayward, Caroline;
- Porteous, David J;
- McIntosh, Andrew M;
- Kendler, Kenneth S
Publication type:
Article
Independent Methylome-Wide Association Studies of Schizophrenia Detect Consistent Case–Control Differences.
Published in:
Schizophrenia Bulletin, 2020, v. 46, n. 2, p. 319, doi. 10.1093/schbul/sbz056
By:
- Chan, Robin F;
- Shabalin, Andrey A;
- Montano, Carolina;
- Hannon, Eilis;
- Hultman, Christina M;
- Fallin, Margaret D;
- Feinberg, Andrew P;
- Mill, Jonathan;
- Oord, Edwin J C G van den;
- Aberg, Karolina A
Publication type:
Article
A Whole Methylome CpG-SNP Association Study of Psychosis in Blood and Brain Tissue.
Published in:
Schizophrenia Bulletin, 2016, v. 42, n. 4, p. 1018, doi. 10.1093/schbul/sbv182
By:
- van den Oord, Edwin J. C. G.;
- Clark, Shaunna L.;
- Lin Ying Xie;
- Shabalin, Andrey A.;
- Dozmorov, Mikhail G.;
- Kumar, Gaurav;
- Vladimirov, Vladimir I.;
- Magnusson, Patrik K. E.;
- Aberg, Karolina A.
Publication type:
Article
Polygenic association of glomerular filtration rate decline in world trade center responders.
Published in:
2022
By:
- Koraishy, Farrukh M.;
- Mann, Frank D.;
- Waszczuk, Monika A.;
- Kuan, Pei-Fen;
- Jonas, Katherine;
- Yang, Xiaohua;
- Docherty, Anna;
- Shabalin, Andrey;
- Clouston, Sean;
- Kotov, Roman;
- Luft, Benjamin
Publication type:
journal article
Assessment of suicide attempt and death in bipolar affective disorder: a combined clinical and genetic approach.
Published in:
Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01500-w
By:
- Monson, Eric T.;
- Shabalin, Andrey A.;
- Docherty, Anna R.;
- DiBlasi, Emily;
- Bakian, Amanda V.;
- Li, Qingqin S.;
- Gray, Douglas;
- Keeshin, Brooks;
- Crowell, Sheila E.;
- Mullins, Niamh;
- Willour, Virginia L.;
- Coon, Hilary
Publication type:
Article
Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 11, p. 1, doi. 10.1093/nar/gkx143
By:
- Chan, Robin F.;
- Shabalin, Andrey A.;
- Xie, Lin Y.;
- Adkins, Daniel E.;
- Min Zhao;
- Turecki, Gustavo;
- Clark, Shaunna L.;
- Aberg, Karolina A.;
- van den Oord, Edwin J. C. G.
Publication type:
Article
Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 7, p. e88, doi. 10.1093/nar/gkt069
By:
- Ramasamy, Adaikalavan;
- Trabzuni, Daniah;
- Gibbs, J. Raphael;
- Dillman, Allissa;
- Hernandez, Dena G.;
- Arepalli, Sampath;
- Walker, Robert;
- Smith, Colin;
- Ilori, Gigaloluwa Peter;
- Shabalin, Andrey A.;
- Li, Yun;
- Singleton, Andrew B.;
- Cookson, Mark R.;
- Hardy, John;
- Ryten, Mina;
- Weale, Michael E.
Publication type:
Article
Extended familial risk of suicide death is associated with younger age at death and elevated polygenic risk of suicide.
Published in:
American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2022, v. 189, n. 3/4, p. 60, doi. 10.1002/ajmg.b.32890
By:
- Coon, Hilary;
- Shabalin, Andrey;
- Bakian, Amanda V.;
- DiBlasi, Emily;
- Monson, Eric T.;
- Kirby, Anne;
- Chen, Danli;
- Fraser, Alison;
- Yu, Zhe;
- Staley, Michael;
- Callor, William Brandon;
- Christensen, Erik D.;
- Crowell, Sheila E.;
- Gray, Douglas;
- Crockett, David K.;
- Li, Qingqin S.;
- Keeshin, Brooks;
- Docherty, Anna R.
Publication type:
Article
Exploring the genetic overlap of suicide‐related behaviors and substance use disorders.
Published in:
American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2021, v. 186, n. 8, p. 445, doi. 10.1002/ajmg.b.32880
By:
- Colbert, Sarah M. C.;
- Hatoum, Alexander S.;
- Shabalin, Andrey;
- Li, Qingqin S.;
- Coon, Hilary;
- Nelson, Elliot C.;
- Agrawal, Arpana;
- Docherty, Anna R.;
- Johnson, Emma C.
Publication type:
Article
Rare protein‐coding variants implicate genes involved in risk of suicide death.
Published in:
American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2021, v. 186, n. 8, p. 508, doi. 10.1002/ajmg.b.32861
By:
- DiBlasi, Emily;
- Shabalin, Andrey A.;
- Monson, Eric T.;
- Keeshin, Brooks R.;
- Bakian, Amanda V.;
- Kirby, Anne V.;
- Ferris, Elliott;
- Chen, Danli;
- William, Nancy;
- Gaj, Eoin;
- Klein, Michael;
- Jerominski, Leslie;
- Callor, W. Brandon;
- Christensen, Erik;
- Smith, Ken R.;
- Fraser, Alison;
- Yu, Zhe;
- Gray, Douglas;
- Camp, Nicola J.;
- Stahl, Eli A.
Publication type:
Article
The Set2/Rpd3S Pathway Suppresses Cryptic Transcription without Regard to Gene Length or Transcription Frequency.
Published in:
PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004886
By:
- Lickwar, Colin R.;
- Bhargavi Rao;
- Shabalin, Andrey A.;
- Nobel, Andrew B.;
- Strahl, Brian D.;
- Lieb, Jason D.
Publication type:
Article
Estimation of cis‐eQTL effect sizes using a log of linear model.
Published in:
Biometrics, 2018, v. 74, n. 2, p. 616, doi. 10.1111/biom.12810
By:
- Palowitch, John;
- Nobel, Andrew B.;
- Shabalin, Andrey;
- Zhou, Yi‐Hui;
- Wright, Fred A.
Publication type:
Article
Refinement of schizophrenia GWAS loci using methylome-wide association data.
Published in:
Human Genetics, 2015, v. 134, n. 1, p. 77, doi. 10.1007/s00439-014-1494-5
By:
- Kumar, Gaurav;
- Clark, Shaunna;
- McClay, Joseph;
- Shabalin, Andrey;
- Adkins, Daniel;
- Xie, Linying;
- Chan, Robin;
- Nerella, Srilaxmi;
- Kim, Yunjung;
- Sullivan, Patrick;
- Hultman, Christina;
- Magnusson, Patrik;
- Aberg, Karolina;
- den Oord, Edwin
Publication type:
Article
Basal-like Breast cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival.
Published in:
Breast Cancer Research & Treatment, 2012, v. 133, n. 3, p. 865, doi. 10.1007/s10549-011-1846-y
By:
- Weigman, Victor;
- Chao, Hann-Hsiang;
- Shabalin, Andrey;
- He, Xiaping;
- Parker, Joel;
- Nordgard, Silje;
- Grushko, Tatyana;
- Huo, Dezheng;
- Nwachukwu, Chika;
- Nobel, Andrew;
- Kristensen, Vessela;
- Børresen-Dale, Anne-Lise;
- Olopade, Olufunmilayo;
- Perou, Charles
Publication type:
Article
Convergence of evidence from a methylome-wide CpG-SNP association study and GWAS of major depressive disorder.
Published in:
Translational Psychiatry, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41398-018-0205-8
By:
- Aberg, Karolina A.;
- Shabalin, Andrey A.;
- Chan, Robin F.;
- Zhao, Min;
- Kumar, Gaurav;
- van Grootheest, Gerard;
- Clark, Shaunna L.;
- Xie, Lin Y.;
- Milaneschi, Yuri;
- Penninx, Brenda W. J. H.;
- van den Oord, Edwin J. C. G.
Publication type:
Article
High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction.
Published in:
Genome Biology, 2015, v. 16, p. 291, doi. 10.1186/s13059-015-0842-7
By:
- McClay, Joseph L.;
- Shabalin, Andrey A.;
- Dozmorov, Mikhail G.;
- Adkins, Daniel E.;
- Kumar, Gaurav;
- Nerella, Srilaxmi;
- Clark, Shaunna L.;
- Bergen, Sarah E.;
- Swedish Schizophrenia Consortium;
- Hultman, Christina M.;
- Magnusson, Patrik K. E.;
- Sullivan, Patrick F.;
- Aberg, Karolina A.;
- van den Oord, Edwin J. C. G.
Publication type:
Article
Building a schizophrenia genetic network: transcription factor 4 regulates genes involved in neuronal development and schizophrenia risk.
Published in:
Human Molecular Genetics, 2018, v. 27, n. 18, p. 3246, doi. 10.1093/hmg/ddy222
By:
- Xia, Hanzhang;
- Jahr, Fay M;
- Kim, Nak-Kyeong;
- Xie, Linying;
- Shabalin, Andrey A;
- Bryois, Julien;
- Sweet, Douglas H;
- Kronfol, Mohamad M;
- Palasuberniam, Preetha;
- McRae, MaryPeace
Publication type:
Article
Merging two gene-expression studies via cross-platform normalization.
Published in:
Bioinformatics, 2008, v. 24, n. 9, p. 1154, doi. 10.1093/bioinformatics/btn083
By:
- Andrey A. Shabalin;
- Håkon Tjelmeland;
- Cheng Fan;
- Charles M. Perou;
- Andrew B. Nobel
Publication type:
Article
TwinEQTL: ultrafast and powerful association analysis for eQTL and GWAS in twin studies.
Published in:
Genetics, 2022, v. 221, n. 4, p. 1, doi. 10.1093/genetics/iyac088
By:
- Kai Xia;
- Shabalin, Andrey A.;
- Zhaoyu Yin;
- Wonil Chung;
- Sullivan, Patrick F.;
- Wright, Fred A.;
- Styner, Martin;
- Gilmore, John H.;
- Santelli, Rebecca C.;
- Fei Zou
Publication type:
Article
Correcting for cell-type effects in DNA methylation studies: reference-based method outperforms latent variable approaches in empirical studies.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1148-8
By:
- Hattab, Mohammad W.;
- Shabalin, Andrey A.;
- Clark, Shaunna L.;
- Min Zhao;
- Kumar, Gaurav;
- Chan, Robin F.;
- Lin Ying Xie;
- Jansen, Rick;
- Han, Laura K. M.;
- Magnusson, Patrik K. E.;
- van Grootheest, Gerard;
- Hultman, Christina M.;
- Penninx, Brenda W. J. H.;
- Aberg, Karolina A.;
- van den Oord, Edwin J. C. G.
Publication type:
Article
Polygenic risk scores for asthma and allergic disease associate with COVID-19 severity in 9/11 responders.
Published in:
PLoS ONE, 2023, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0282271
By:
- Waszczuk, Monika A.;
- Morozova, Olga;
- Lhuillier, Elizabeth;
- Docherty, Anna R.;
- Shabalin, Andrey A.;
- Yang, Xiaohua;
- Carr, Melissa A.;
- Clouston, Sean A. P.;
- Kotov, Roman;
- Luft, Benjamin J.
Publication type:
Article
RaMWAS: fast methylome-wide association study pipeline for enrichment platforms.
Published in:
Bioinformatics, 2018, v. 34, n. 13, p. 2283, doi. 10.1093/bioinformatics/bty069
By:
- Shabalin, Andrey A;
- Hattab, Mohammad W;
- Clark, Shaunna L;
- Chan, Robin F;
- Kumar, Gaurav;
- Aberg, Karolina A;
- Oord, Edwin J C G van den
Publication type:
Article
Matrix eQTL: ultra fast eQTL analysis via large matrix operations.
Published in:
Bioinformatics, 2012, v. 28, n. 10, p. 1353, doi. 10.1093/bioinformatics/bts163
By:
- Shabalin, Andrey A.
Publication type:
Article
seeQTL: a searchable database for human eQTLs.
Published in:
Bioinformatics, 2012, v. 28, n. 3, p. 451, doi. 10.1093/bioinformatics/btr678
By:
- Xia, Kai;
- Shabalin, Andrey A.;
- Huang, Shunping;
- Madar, Vered;
- Zhou, Yi-Hui;
- Wang, Wei;
- Zou, Fei;
- Sun, Wei;
- Sullivan, Patrick F.;
- Wright, Fred A.
Publication type:
Article
FastMap: Fast eQTL mapping in homozygous populations.
Published in:
Bioinformatics, 2009, v. 25, n. 4, p. 482, doi. 10.1093/bioinformatics/btn648
By:
- Daniel M. Gatti;
- Andrey A. Shabalin;
- Tieu-Chong Lam;
- Fred A. Wright;
- Ivan Rusyn;
- Andrew B. Nobel
Publication type:
Article
Deep Sequencing of Three Loci Implicated in Large-Scale Genome-Wide Association Study Smoking Meta-Analyses.
Published in:
2016
By:
- Clark, Shaunna L.;
- McClay, Joseph L.;
- Adkins, Daniel E.;
- Aberg, Karolina A.;
- Kumar, Gaurav;
- Nerella, Sri;
- Xie, Linying;
- Collins, Ann L.;
- Crowley, James J.;
- Quakenbush, Corey R.;
- Hillard, Christopher E.;
- Gao, Guimin;
- Shabalin, Andrey A.;
- Peterson, Roseann E.;
- Copeland, William E.;
- Silberg, Judy L.;
- Maes, Hermine;
- Sullivan, Patrick F.;
- Costello, Elizabeth J.;
- van den Oord, Edwin J.
Publication type:
journal article
Harnessing changes in open chromatin determined by ATAC-seq to generate insulin-responsive reporter constructs.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08637-y
By:
- Merrill, Collin B.;
- Montgomery, Austin B.;
- Pabon, Miguel A.;
- Shabalin, Andrey A.;
- Rodan, Aylin R.;
- Rothenfluh, Adrian
Publication type:
Article

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