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- Title
Integrated machine learning and multimodal data fusion for patho-phenotypic feature recognition in iPSC models of dilated cardiomyopathy.
- Authors
Wali, Ruheen; Xu, Hang; Cheruiyot, Cleophas; Saleem, Hafiza Nosheen; Janshoff, Andreas; Habeck, Michael; Ebert, Antje
- Abstract
Integration of multiple data sources presents a challenge for accurate prediction of molecular patho-phenotypic features in automated analysis of data from human model systems. Here, we applied a machine learning-based data integration to distinguish patho-phenotypic features at the subcellular level for dilated cardiomyopathy (DCM). We employed a human induced pluripotent stem cell-derived cardiomyocyte (iPSC-CM) model of a DCM mutation in the sarcomere protein troponin T (TnT), TnT-R141W, compared to isogenic healthy (WT) control iPSC-CMs. We established a multimodal data fusion (MDF)-based analysis to integrate source datasets for Ca2+ transients, force measurements, and contractility recordings. Data were acquired for three additional layer types, single cells, cell monolayers, and 3D spheroid iPSC-CM models. For data analysis, numerical conversion as well as fusion of data from Ca2+ transients, force measurements, and contractility recordings, a non-negative blind deconvolution (NNBD)-based method was applied. Using an XGBoost algorithm, we found a high prediction accuracy for fused single cell, monolayer, and 3D spheroid iPSC-CM models (≥92 ± 0.08 %), as well as for fused Ca2+ transient, beating force, and contractility models (>96 ± 0.04 %). Integrating MDF and XGBoost provides a highly effective analysis tool for prediction of patho-phenotypic features in complex human disease models such as DCM iPSC-CMs.
- Subjects
MULTISENSOR data fusion; DILATED cardiomyopathy; MACHINE learning; MULTIMODAL user interfaces; DATA integration; DATA fusion (Statistics); MEDIUM density fiberboard; ATOMIC force microscopy
- Publication
Biological Chemistry, 2024, Vol 405, Issue 6, p427
- ISSN
1431-6730
- Publication type
Article
- DOI
10.1515/hsz-2024-0023