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- Title
PlasCAT: Plasmid Cloud Assembly Tool.
- Authors
Peccoud, Samuel; Berezin, Casey-Tyler; Hernandez, Sarah I; Peccoud, Jean
- Abstract
Summary PlasCAT (Plasmid Cloud Assembly Tool) is an easy-to-use cloud-based bioinformatics tool that enables de novo plasmid sequence assembly from raw sequencing data. Nontechnical users can now assemble sequences from long reads and short reads without ever touching a line of code. PlasCAT uses high-performance computing servers to reduce run times on assemblies and deliver results faster. Availability and implementation PlasCAT is freely available on the web at https://sequencing.genofab.com. The assembly pipeline source code and server code are available for download at https://bitbucket.org/genofabinc/workspace/projects/PLASCAT. Click the Cancel button to access the source code without authenticating. Web servers implemented in React.js and Python, with all major browsers supported.
- Subjects
SOURCE code; INTERNET servers; BIOINFORMATICS software; PYTHONS
- Publication
Bioinformatics, 2024, Vol 40, Issue 5, p1
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btae299