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Computational prediction of multiple antigen epitopes.
- Published in:
- Bioinformatics, 2024, v. 40, n. 10, p. 1, doi. 10.1093/bioinformatics/btae556
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- Article
Saturating representation of loop conformational fragments in structure databanks.
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- BMC Structural Biology, 2006, v. 6, p. 15, doi. 10.1186/1472-6807-6-15
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- Publication type:
- Article
Nuc-ErbB3 regulates H3K27me3 levels and HMT activity to establish epigenetic repression during peripheral myelination.
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- Glia, 2016, v. 64, n. 6, p. 977, doi. 10.1002/glia.22977
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- Article
Prediction of DNA binding motifs from 3D models of transcription factors; identifying TLX3 regulated genes.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 13500, doi. 10.1093/nar/gku1228
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- Article
M4T: a comparative protein structure modeling server.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W363, doi. 10.1093/nar/gkm341
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- Article
Optimal selection of suitable templates in protein interface prediction.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad510
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- Article
INTERCAAT: identifying interface residues between macromolecules.
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- Bioinformatics, 2022, v. 38, n. 2, p. 554, doi. 10.1093/bioinformatics/btab596
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- Article
Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii.
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- PLoS ONE, 2008, v. 3, n. 12, p. 1, doi. 10.1371/journal.pone.0003899
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- Article
Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 Å resolution.
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- Proteins, 2010, v. 78, n. 14, p. 3056, doi. 10.1002/prot.22829
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- Article
Effects of amino acid composition, finite size of proteins, and sparse statistics on distance-dependent statistical pair potentials.
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- Proteins, 2007, v. 67, n. 3, p. 559, doi. 10.1002/prot.21279
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- Publication type:
- Article
Multiple mapping method: A novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.
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- Proteins, 2006, v. 63, n. 3, p. 644, doi. 10.1002/prot.20835
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- Publication type:
- Article
Metabolomic Analysis of Patient Plasma Yields Evidence of Plant-Like α-Linolenic Acid Metabolism in Plasmodium falciparum.
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- Journal of Infectious Diseases, 2012, v. 206, n. 2, p. 238, doi. 10.1093/infdis/jis339
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- Publication type:
- Article
miRNA-mediated loss of m<sup>6</sup>A increases nascent translation in glioblastoma.
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- PLoS Genetics, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pgen.1009086
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- Article
Photo-assisted peptide enrichment in protein complex cross-linking analysis of a model homodimeric protein using mass spectrometry.
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- Proteomics, 2011, v. 11, n. 20, p. 4109, doi. 10.1002/pmic.201100015
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- Article
Transactivation of Abl by the Crk II adapter protein requires a PNAY sequence in the Crk C-terminal SH3 domain.
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- Oncogene, 2005, v. 24, n. 55, p. 8187, doi. 10.1038/sj.onc.1208988
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- Publication type:
- Article
EPIC-DB: a proteomics database for studying Apicomplexan organisms.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-38
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- Publication type:
- Article
Protein structure based prediction of catalytic residues.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-63
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- Article
New statistical potential for quality assessment ofprotein models and a survey of energy functions.
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- BMC Bioinformatics, 2010, v. 11, p. 128, doi. 10.1186/1471-2105-11-128
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- Article
Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications.
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- Bio-Algorithms & Med-Systems, 2014, v. 10, n. 4, p. 195, doi. 10.1515/bams-2014-0016
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- Publication type:
- Article
ArchPRED: a template based loop structure prediction server.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w173, doi. 10.1093/nar/gkl113
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- Publication type:
- Article
A supersecondary structure library and search algorithm for modeling loops in protein structures.
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- Nucleic Acids Research, 2006, v. 34, n. 7, p. 2085, doi. 10.1093/nar/gkl156
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- Publication type:
- Article
MODBASE, a database of annotated comparative protein structure models, and associated resources.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d217
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- Article
Tools for comparative protein structure modeling and analysis.
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- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3375, doi. 10.1093/nar/gkg543
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- Publication type:
- Article
Servers for sequence–structure relationship analysis and prediction.
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- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3359, doi. 10.1093/nar/gkg589
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- Publication type:
- Article
Modularity of Protein Folds as a Tool for Template-Free Modeling of Structures.
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- PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004419
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- Article
The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks.
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- PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002865
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- Article
Structural Characteristics of Novel Protein Folds.
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- PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000750
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- Article
Core Histones of the Amitochondriate Protist, Giardia lamblia.
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- Molecular Biology & Evolution, 2000, v. 17, n. 8, p. 1156, doi. 10.1093/oxfordjournals.molbev.a026398
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- Article
Letter to the Editor: 1H, 13C, 15N resonance assignments and fold verification of a circular permuted variant of the potent HIV-inactivating protein cyanovirin-N*.
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- Journal of Biomolecular NMR, 2001, v. 19, n. 3, p. 289, doi. 10.1023/A:1011292919947
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- Article
Predicting disulfide bond connectivity in proteins by correlated mutations analysis.
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- Bioinformatics, 2008, v. 24, n. 4, p. 498, doi. 10.1093/bioinformatics/btm637
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- Publication type:
- Article
Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.
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- Bioinformatics, 2007, v. 23, n. 19, p. 2558, doi. 10.1093/bioinformatics/btm377
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- Publication type:
- Article
MMM: a sequence-to-structure alignment protocol.
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- Bioinformatics, 2006, v. 22, n. 21, p. 2691
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- Publication type:
- Article
ModLoop: automated modeling of loops in protein structures.
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- Bioinformatics, 2003, v. 19, n. 18, p. 2500, doi. 10.1093/bioinformatics/btg362
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- Article
Predicting the oxidation state of cysteines by multiple sequence alignment.
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- Bioinformatics, 2000, v. 16, n. 3, p. 251, doi. 10.1093/bioinformatics/16.3.251
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- Article
A word of caution about biological inference – Revisiting cysteine covalent state predictions.
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- FEBS Open Bio, 2014, v. 4, p. 310, doi. 10.1016/j.fob.2014.03.003
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- Article
A word of caution about biological inference – Revisiting cysteine covalent state predictions.
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- FEBS Open Bio, 2014, v. 4, n. 1, p. 310, doi. 10.1016/j.fob.2014.03.003
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- Publication type:
- Article
Pathogenic NAP57 mutations decrease ribonucleoprotein assembly in dyskeratosis congenita.
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- Human Molecular Genetics, 2009, v. 18, n. 23, p. 4546, doi. 10.1093/hmg/ddp416
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- Article
Modeling mutations in protein structures.
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- Protein Science: A Publication of the Protein Society, 2007, v. 16, n. 9, p. 2030, doi. 10.1110/ps.072855507
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- Article
Modeling of loops in protein structures.
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- Protein Science: A Publication of the Protein Society, 2000, v. 9, n. 9, p. 1753
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- Publication type:
- Article
Estimating the accuracy of pharmacophore‐based detection of cognate receptor‐ligand pairs in the immunoglobulin superfamily.
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- Proteins, 2021, v. 89, n. 6, p. 632, doi. 10.1002/prot.26046
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- Article
Discovery of receptor‐ligand interfaces in the immunoglobulin superfamily.
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- Proteins, 2020, v. 88, n. 1, p. 135, doi. 10.1002/prot.25778
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- Article
Assessing the accuracy of contact predictions in CASP13.
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- Proteins, 2019, v. 87, n. 12, p. 1058, doi. 10.1002/prot.25819
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- Article
Development of a motif-based topology-independent structure comparison method to identify evolutionarily related folds.
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- Proteins, 2016, v. 84, n. 12, p. 1859, doi. 10.1002/prot.25169
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- Article
Protein—protein binding supersites.
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- PLoS Computational Biology, 2019, v. 15, n. 01, p. 1, doi. 10.1371/journal.pcbi.1006704
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- Article
The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis.
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- Bioinformatics, 2019, v. 35, n. 1, p. 12, doi. 10.1093/bioinformatics/bty523
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- Article
Identifying functionally informative evolutionary sequence profiles.
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- Bioinformatics, 2018, v. 34, n. 8, p. 1278, doi. 10.1093/bioinformatics/btx779
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- Publication type:
- Article
Identification and functional validation of an enhancer variant in the 9p21.3 locus associated with glaucoma risk and elevated expression of p16<sup>INK4a</sup>.
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- Aging Cell, 2023, v. 22, n. 9, p. 1, doi. 10.1111/acel.13908
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- Publication type:
- Article
HIV-Tat regulates macrophage gene expression in the context of neuroAIDS.
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- PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0179882
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- Article
Assessing the functional impact of protein binding site definition.
- Published in:
- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 6, p. 1, doi. 10.1002/pro.5026
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- Article
A Nuclear Variant of ErbB3 Receptor Tyrosine Kinase Regulates Ezrin Distribution and Schwann Cell Myelination.
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- Journal of Neuroscience, 2011, v. 31, n. 13, p. 5106, doi. 10.1523/JNEUROSCI.5635-10.2011
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- Article