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- Title
Integrated bioinformatics analysis for novel miRNAs markers and ceRNA network in diabetic retinopathy.
- Authors
Jingru Li; Chaozhong Li; Yulan Zhao; Xinyu Wu; Shuai Yu; Guihu Sun; Peng Ding; Si Lu; Lijiao Zhang; Ping Yang; Yunzhu Peng; Jingyun Fu; Luqiao Wang
- Abstract
In order to seek a more outstanding diagnosis and treatment of diabetic retinopathy (DR), we predicted the miRNA biomarkers of DR and explored the pathological mechanism of DR through bioinformatics analysis. Method: Based on public omics data and databases, we investigated ncRNA (non-coding RNA) functions based on the ceRNA hypothesis. Result: Among differentially expressed miRNAs (DE-miRNAs), hsa-miR-1179, -4797-3p and -665 may be diagnosis biomarkers of DR. Functional enrichment analysis revealed differentially expressed mRNAs (DE-mRNAs) enriched in mitochondrial transport, cellular respiration and energy derivation. 18 tissue/organ-specific expressed genes, 10 hub genes and gene cluster modules were identified. The ceRNA networks lncRNA FBXL19-AS1/miR-378f/MRPL39 and lncRNA UBL7-AS1/miR-378f/MRPL39 might be potential RNA regulatory pathways in DR. Conclusion: Differentially expressed hsa-miR-1179, -4797-3p and -665 can be used as powerful markers for DR diagnosis, and the ceRNA network: lncRNA FBXL19-AS1/UBL7-AS1-miR-378f-MRPL39 may represent an important regulatory role in DR progression.
- Subjects
BIOINFORMATICS; DIABETIC retinopathy; NON-coding RNA; MICRORNA; GENE regulatory networks; BIOINFORMATICS software; OXYGEN consumption
- Publication
Frontiers in Genetics, 2022, Vol 13, p1
- ISSN
1664-8021
- Publication type
Article
- DOI
10.3389/fgene.2022.874885