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- Title
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.
- Authors
Ganter, Mathias; Bernard, Thomas; Moretti, Sébastien; Stelling, Joerg; Pagni, Marco
- Abstract
Summary: MetaNetX.org is a website for accessing, analysing and manipulating genome-scale metabolic networks (GSMs) as well as biochemical pathways. It consistently integrates data from various public resources and makes the data accessible in a standardized format using a common namespace. Currently, it provides access to hundreds of GSMs and pathways that can be interactively compared (two or more), analysed (e.g. detection of dead-end metabolites and reactions, flux balance analysis or simulation of reaction and gene knockouts), manipulated and exported. Users can also upload their own metabolic models, choose to automatically map them into the common namespace and subsequently make use of the website’s functionality.Availability and implementation: MetaNetX.org is available at http://metanetx.org.Contact: help@metanetx.org
- Subjects
GENOMIC information retrieval; ACCESS control of records; INFORMATION filtering; NAMESPACE (Computer science); MICROSOFT Access (Computer software); METABOLITES; METABOLIC flux analysis
- Publication
Bioinformatics, 2013, Vol 29, Issue 6, p815
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btt036