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- Title
DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data.
- Authors
Kim, Hyun Woo; Zhang, Chen; Reher, Raphael; Wang, Mingxun; Alexander, Kelsey L.; Nothias, Louis-Félix; Han, Yoo Kyong; Shin, Hyeji; Lee, Ki Yong; Lee, Kyu Hyeong; Kim, Myeong Ji; Dorrestein, Pieter C.; Gerwick, William H.; Cottrell, Garrison W.
- Abstract
The identification of molecular structure is essential for understanding chemical diversity and for developing drug leads from small molecules. Nevertheless, the structure elucidation of small molecules by Nuclear Magnetic Resonance (NMR) experiments is often a long and non-trivial process that relies on years of training. To achieve this process efficiently, several spectral databases have been established to retrieve reference NMR spectra. However, the number of reference NMR spectra available is limited and has mostly facilitated annotation of commercially available derivatives. Here, we introduce DeepSAT, a neural network-based structure annotation and scaffold prediction system that directly extracts the chemical features associated with molecular structures from their NMR spectra. Using only the 1H-13C HSQC spectrum, DeepSAT identifies related known compounds and thus efficiently assists in the identification of molecular structures. DeepSAT is expected to accelerate chemical and biomedical research by accelerating the identification of molecular structures.
- Subjects
NUCLEAR magnetic resonance; MOLECULAR structure; NUCLEAR structure; CONVOLUTIONAL neural networks; NUCLEAR magnetic resonance spectroscopy; SINGLE molecule magnets; CHEMICAL shift (Nuclear magnetic resonance)
- Publication
Journal of Cheminformatics, 2023, Vol 15, Issue 1, p1
- ISSN
1758-2946
- Publication type
Article
- DOI
10.1186/s13321-023-00738-4