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Blood-based T cell receptor anti-viral CDR3s are associated with worse overall survival for neuroblastoma.
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- Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 13, p. 12047, doi. 10.1007/s00432-023-05059-5
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- Article
Delineation of a T-cell receptor CDR3-cancer mutanome aromaticity factor, assessable via blood samples, that facilitates the establishment of survival distinctions in bladder cancer.
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- Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 8, p. 4359, doi. 10.1007/s00432-022-04339-w
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- Article
T-cell receptor-α CDR3 domain chemical features correlate with survival rates in bladder cancer.
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- Journal of Cancer Research & Clinical Oncology, 2019, v. 145, n. 3, p. 615, doi. 10.1007/s00432-018-2815-1
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- Article
Identification of specific feed-forward apoptosis mechanisms and associated higher survival rates for low grade glioma and lung squamous cell carcinoma.
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- Journal of Cancer Research & Clinical Oncology, 2018, v. 144, n. 3, p. 459, doi. 10.1007/s00432-017-2569-1
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- Article
Substantially reduced expression of PIAS1 is associated with colon cancer development.
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- Journal of Cancer Research & Clinical Oncology, 2009, v. 135, n. 9, p. 1287, doi. 10.1007/s00432-009-0570-z
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- Article
Exploiting adaptive immune receptor recombination read recoveries from exome files to identify subsets of ALL and to establish TCR features that correlate with better outcomes.
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- International Journal of Laboratory Hematology, 2022, v. 44, n. 5, p. 883, doi. 10.1111/ijlh.13862
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TCR gene segment usage and HLA alleles that are associated with cancer survival rates also represent racial disparities.
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- International Journal of Immunogenetics, 2023, v. 50, n. 2, p. 41, doi. 10.1111/iji.12610
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A comparison of immune receptor recombination databases sourced from tumour exome or RNAseq files: Verifications of immunological distinctions between primary and metastatic melanoma.
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- International Journal of Immunogenetics, 2021, v. 48, n. 5, p. 409, doi. 10.1111/iji.12550
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- Article
TRB‐J1 usage, in combination with the HLA‐A*01:01 allele, represents an apparent survival advantage for uterine corpus endometrial carcinoma: Comparisons with microscopic assessments of lymphocyte infiltrates.
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- International Journal of Immunogenetics, 2019, v. 46, n. 1, p. 31, doi. 10.1111/iji.12409
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- Article
Adaptive immune receptor features related to breast cancer tissue in Kenyan patients: high immunoglobulin gene expression and high levels of gamma-delta T-cells.
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- Breast Cancer Research & Treatment, 2023, v. 199, n. 1, p. 207, doi. 10.1007/s10549-023-06897-0
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- Article
Chemical features of blood-borne TRG CDR3s associated with an increased overall survival in breast cancer.
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- Breast Cancer Research & Treatment, 2021, v. 185, n. 3, p. 591, doi. 10.1007/s10549-020-05996-6
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- Article
Immune receptor recombinations from breast cancer exome files, independently and in combination with specific HLA alleles, correlate with better survival rates.
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- Breast Cancer Research & Treatment, 2019, v. 173, n. 1, p. 167, doi. 10.1007/s10549-018-4961-1
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- Article
TRB CDR3 chemical complementarity with HBV epitopes correlates with increased hepatocellular carcinoma, disease‐free survival.
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- Journal of Medical Virology, 2023, v. 95, n. 8, p. 1, doi. 10.1002/jmv.29043
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Immunoscoring by correlating MHC class II and TCR expression: high level immune functions represented by the KIRP dataset of TCGA.
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- Cell & Tissue Research, 2016, v. 363, n. 2, p. 491, doi. 10.1007/s00441-015-2261-1
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- Article
RB and A novel E2F-1 binding protein in MHC class II deficient B-cell lines and normal IFN-γ induction of the class II transactivator ciita in class II non-inducible RB-defective tumor lines.
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- International Journal of Cancer, 1995, v. 62, n. 4, p. 461, doi. 10.1002/ijc.2910620417
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- Article
Tumor Resident, B-Cell Receptor Chemical Characteristics Associated with Better Overall Survival for Neuroblastoma.
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- Journal of Molecular Neuroscience, 2022, v. 72, n. 9, p. 2011, doi. 10.1007/s12031-022-02050-6
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- Article
Systemic Adaptive Immune Parameters Associated with Neuroblastoma Outcomes: the Significance of Gamma-Delta T Cells.
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- Journal of Molecular Neuroscience, 2021, v. 71, n. 11, p. 2393, doi. 10.1007/s12031-021-01813-x
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- Article
T cell receptor-β J usage, in combination with particular HLA class II alleles, correlates with better cancer survival rates.
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- Immunologic Research, 2018, v. 66, n. 2, p. 219, doi. 10.1007/s12026-018-8990-y
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- Article
IGL CDR3 Hydropathy and Antigen Chemical Complementarity Associated with Greater Disease-Free Survival in Lung Adenocarcinoma: Implications for Gender Disparities.
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- Biochemical Genetics, 2024, v. 62, n. 1, p. 530, doi. 10.1007/s10528-023-10437-2
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- Article
T-cell receptor-β V and J usage, in combination with particular HLA class I and class II alleles, correlates with cancer survival patterns.
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- Cancer Immunology, Immunotherapy, 2018, v. 67, n. 6, p. 885, doi. 10.1007/s00262-018-2139-7
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- Article
T cell receptor gene recombinations in human tumor specimen exome files: detection of T cell receptor-β VDJ recombinations associates with a favorable oncologic outcome for bladder cancer.
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- Cancer Immunology, Immunotherapy, 2017, v. 66, n. 3, p. 403, doi. 10.1007/s00262-016-1943-1
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- Article
Mutations and regulatory anomalies effecting tumor cell immune functions.
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- Cancer Immunology, Immunotherapy, 2004, v. 53, n. 1, p. 1, doi. 10.1007/s00262-003-0418-3
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- Article
Development of CD30+ lymphoproliferative disease in mice lacking interferon regulatory factor-1.
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- Oncogene, 2003, v. 22, n. 40, p. 6166, doi. 10.1038/sj.onc.1206563
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- Article
Impaired class II transactivator expression in mice lacking interferon regulatory factor-2.
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- Oncogene, 2001, v. 20, n. 31, p. 4219, doi. 10.1038/sj.onc.1204556
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- Article
Apigenin Targets MicroRNA-155, Enhances SHIP-1 Expression, and Augments Anti-Tumor Responses in Pancreatic Cancer.
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- Cancers, 2022, v. 14, n. 15, p. 3613, doi. 10.3390/cancers14153613
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- Article
Co-occupancy of the interferon regulatory element of the class II transactivator (CIITA) Type IV promoter by interferon regulatory factors 1 and 2.
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- Oncogene, 1999, v. 18, n. 43, p. 5889, doi. 10.1038/sj.onc.1202969
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- Article
Bacterial Sequencing Reads in Blood Exome Files from Melanoma and Cervical Cancer Patients are Associated with Cancer Recurrence.
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- Molecular Biotechnology, 2023, v. 65, n. 9, p. 1476, doi. 10.1007/s12033-023-00663-9
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- Article
MHC class II associated stomach cancer mutations correlate with lack of subsequent tumor development.
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- Molecular & Clinical Oncology, 2017, v. 7, n. 6, p. 1119, doi. 10.3892/mco.2017.1432
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- Article
Immune receptor CDR3 chemical features that preserve sequence information are highly efficient in reflecting survival distinctions: A pan-cancer analysis.
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- Biomedical Reports, 2022, v. 17, n. 2, p. N.PAG, doi. 10.3892/br.2022.1551
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- Article
Protected cytoskeletal‑related proteins: Towards a resolution of contradictions regarding the role of the cytoskeleton in cancer.
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- Biomedical Reports, 2017, v. 7, n. 2, p. 163, doi. 10.3892/br.2017.940
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- Article
De novo, systemic, deleterious amino acid substitutions are common in large cytoskeleton-related protein coding regions.
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- Biomedical Reports, 2017, v. 6, n. 2, p. 211, doi. 10.3892/br.2016.826
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- Article
The presence of intratumoral Porphyromonas gingivalis correlates with a previously defined pancreatic adenocarcinoma, immune cell expression phenotype and with tumor resident, adaptive immune receptor features.
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- Carcinogenesis, 2023, v. 44, n. 5, p. 411, doi. 10.1093/carcin/bgad033
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Interferon regulatory factor-2 point mutations in human pancreatic tumors.
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- International Journal of Cancer, 2000, v. 87, n. 6, p. 803, doi. 10.1002/1097-0215(20000915)87:6<803::AID-IJC7>3.0.CO;2-E
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Worse Wilms’ Tumor Outcomes Associated With Chemical Complementarity for Multiple T-Cell Receptor CDR3-CMV Epitope Pairs.
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- Cancer Genomics & Proteomics (1109-6535), 2024, v. 21, n. 5, p. 439, doi. 10.21873/cgp.20462
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A Bioinformatics Assessment Indicating Better Outcomes With Breast Cancer Resident, Immunoglobulin CDR3-MMP2 Binding.
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- Cancer Genomics & Proteomics (1109-6535), 2023, v. 20, n. 3, p. 239, doi. 10.21873/cgp.20378
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- Article
Technological advances in the study of HLA-DRA promoter regulation: Extending the functions of CIITA, Oct-1, Rb, and RFX.
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- Acta Biochimica et Biophysica Sinica, 2009, v. 41, n. 3, p. 198, doi. 10.1093/abbs/gmp002
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- Article
Electrostatic Complementarities of Glioblastoma-Resident T-Cell Receptors and Cancer Testis Antigens Linked to Poor Outcomes and High Levels of Sphingosine Kinase-2 Expression.
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- Biology (2079-7737), 2023, v. 12, n. 4, p. 575, doi. 10.3390/biology12040575
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- Article
Cytoskeleton and ECM tumor mutant peptides: Increased protease sensitivities and potential consequences for the HLA class I mutant epitope reservoir.
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- International Journal of Cancer, 2018, v. 142, n. 5, p. 988, doi. 10.1002/ijc.31111
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- Article
Assessing microenvironment immunogenicity using tumor specimen exomes: Co-detection of TcR-α/β V(D)J recombinations correlates with PD-1 expression.
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- International Journal of Cancer, 2017, v. 140, n. 11, p. 2568, doi. 10.1002/ijc.30675
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- Article
High-throughput quantitative assessments of the chemical complementarity of celiac disease-related IGH CDR3s and a gliadin epitope.
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- International Immunology, 2024, v. 36, n. 9, p. 465, doi. 10.1093/intimm/dxae025
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- Article
TcR-α recombinations in renal cell carcinoma exome files correlate with an intermediate level of T-cell exhaustion biomarkers.
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- International Immunology, 2018, v. 30, n. 1, p. 35, doi. 10.1093/intimm/dxx074
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TCR CDR3‐antigen chemical complementarity associated with poor ovarian cancer outcomes: A vestigial immune response to early cancer antigens?
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- American Journal of Reproductive Immunology, 2023, v. 89, n. 1, p. 1, doi. 10.1111/aji.13639
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- Article
Detection of Productively Rearranged TcR-α V-J Sequences in TCGA Exome Files: Implications for Tumor Immunoscoring and Recovery of Antitumor T-cells.
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- Cancer Informatics, 2016, n. 15, p. 23, doi. 10.4137/CIN.S35784
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- Article
A scoring system for the electrostatic complementarities of T‐cell receptors and cancer‐mutant amino acids: multi‐cancer analyses of associated survival rates.
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- Immunology, 2020, v. 159, n. 4, p. 373, doi. 10.1111/imm.13165
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- Article
Recovery of T-cell receptor V(D)J recombination reads from lower grade glioma exome files correlates with reduced survival and advanced cancer grade.
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- Journal of Neuro-Oncology, 2018, v. 140, n. 3, p. 697, doi. 10.1007/s11060-018-03001-1
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- Article
Elucidating feed-forward apoptosis signatures in breast cancer datasets: Higher FOS expression associated with a better outcome.
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- Oncology Letters, 2018, v. 16, n. 2, p. 2757, doi. 10.3892/ol.2018.8957
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- Article
Overlap of the cancer genome atlas and the immune epitope database.
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- Oncology Letters, 2016, v. 12, n. 4, p. 2982, doi. 10.3892/ol.2016.4991
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- Article
IFN-γ inducibility of class II transactivator is specifically lacking in human tumour lines: Relevance to retinoblastoma protein rescue of IFN-γ inducibility of the HLA class II genes.
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- Immunology & Cell Biology, 1997, v. 75, n. 4, p. 325, doi. 10.1038/icb.1997.50
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The human, F-actin-based cytoskeleton as a mutagen sensor.
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- Cancer Cell International, 2017, v. 17, p. 1, doi. 10.1186/s12935-017-0488-5
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- Article
Matrix‐Metalloprotease Resistant Mucin‐16 (MUC16) Peptide Mutants Represent a Worse Lung Adenocarcinoma Outcome.
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- Proteomics - Clinical Applications, 2019, v. 13, n. 4, p. N.PAG, doi. 10.1002/prca.201800155
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