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Children with eosinophilic esophagitis non‐responsive to combination therapy have distinct esophageal transcriptomic and microbiome profile.
Published in:
Allergy, 2024, v. 79, n. 10, p. 2798, doi. 10.1111/all.16208
By:
- Hiremath, Girish;
- Choksi, Yash;
- Correa, Hernan;
- Jacobse, Justin;
- Das, Suman R.;
- Ma, Siyuan;
- Goettel, Jeremy A.;
- Rajagopala, Seesandra V.
Publication type:
Article
Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon hispidus).
Published in:
PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166336
By:
- Patel, Mira C.;
- Wang, Wei;
- Pletneva, Lioubov M.;
- Rajagopala, Seesandra V.;
- Tan, Yi;
- Hartert, Tina V.;
- Boukhvalova, Marina S.;
- Vogel, Stefanie N.;
- Das, Suman R.;
- Blanco, Jorge C. G.
Publication type:
Article
Association between Oral Microbiome and Esophageal Diseases: A State-of-the-Art Review.
Published in:
Digestive Diseases, 2022, v. 40, n. 3, p. 345, doi. 10.1159/000517736
By:
- Bernard, Rachel;
- Fazili, Irtiqa;
- Rajagopala, Seesandra V.;
- Das, Suman R.;
- Hiremath, Girish
Publication type:
Article
Cotton rat lung transcriptome reveals host immune response to Respiratory Syncytial Virus infection.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29374-x
By:
- Rajagopala, Seesandra V.;
- Singh, Harinder;
- Patel, Mira C.;
- Wang, Wei;
- Tan, Yi;
- Shilts, Meghan H.;
- Hartert, Tina V.;
- Boukhvalova, Marina S.;
- Blanco, Jorge C. G.;
- Das, Suman R.
Publication type:
Article
Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer.
Published in:
Scientific Reports, 2017, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41598-017-10675-6
By:
- Ngô, Huân M.;
- Zhou, Ying;
- Lorenzi, Hernan;
- Wang, Kai;
- Kim, Taek-Kyun;
- Zhou, Yong;
- El Bissati, Kamal;
- Mui, Ernest;
- Fraczek, Laura;
- Rajagopala, Seesandra V.;
- Roberts, Craig W.;
- Henriquez, Fiona L.;
- Montpetit, Alexandre;
- Blackwell, Jenefer M.;
- Jamieson, Sarra E.;
- Wheeler, Kelsey;
- Begeman, Ian J.;
- Naranjo-Galvis, Carlos;
- Alliey-Rodriguez, Ney;
- Davis, Roderick G.
Publication type:
Article
Mucosal Microbiome Disruption in Acute Laryngeal Injury Following Intubation.
Published in:
Otolaryngology-Head & Neck Surgery, 2024, v. 170, n. 3, p. 977, doi. 10.1002/ohn.580
By:
- Davis, Ruth J.;
- Shilts, Meghan H.;
- Strickland, Britton A.;
- Rajagopala, Seesandra V.;
- Das, Suman R.;
- Wootten, Christopher T.;
- Gelbard, Alexander
Publication type:
Article
Evolutionarily Conserved Herpesviral Protein Interaction Networks.
Published in:
PLoS Pathogens, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.ppat.1000570
By:
- Fossum, Even;
- Friedel, Caroline C.;
- Rajagopala, Seesandra V.;
- Titz, Björn;
- Baiker, Armin;
- Schmidt, Tina;
- Kraus, Theo;
- Stellberger, Thorsten;
- Rutenberg, Christiane;
- Suthram, Silpa;
- Bandyopadhyay, Sourav;
- Rose, Dietlind;
- von Brunn, Albrecht;
- Uhlmann, Mareike;
- Zeretzke, Christine;
- Yu-An Dong;
- Boulet, Hélène;
- Koegl, Manfred;
- Bailer, Susanne M.;
- Koszinowski, Ulrich
Publication type:
Article
Proton Pump Inhibitors Modulate Gene Expression Profile in Esophageal Mucosa and Microbiome.
Published in:
Journal of Pediatric Pharmacology & Therapeutics, 2023, v. 28, n. 6, p. 504, doi. 10.5863/1551-6776-28.6.504
By:
- Rajagopala, Seesandra V.;
- Shilts, Meghan H.;
- Correa, Hernan;
- Das, Suman R.;
- Choksi, Yash A.;
- Jacobse, Justin;
- Goettel, Jeremy A.;
- Hiremath, Girish
Publication type:
Article
Publisher Correction: Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer.
Published in:
2019
By:
- Ngô, Huân M.;
- Zhou, Ying;
- Lorenzi, Hernan;
- Wang, Kai;
- Kim, Taek-Kyun;
- Zhou, Yong;
- El Bissati, Kamal;
- Mui, Ernest;
- Fraczek, Laura;
- Rajagopala, Seesandra V.;
- Roberts, Craig W.;
- Henriquez, Fiona L.;
- Montpetit, Alexandre;
- Blackwell, Jenefer M.;
- Jamieson, Sarra E.;
- Wheeler, Kelsey;
- Begeman, Ian J.;
- Naranjo-Galvis, Carlos;
- Alliey-Rodriguez, Ney;
- Davis, Roderick G.
Publication type:
Correction Notice
The protein network of bacterial motility.
Published in:
Molecular Systems Biology, 2007, v. 3, n. 1, p. 128, doi. 10.1038/msb4100166
By:
- Rajagopala, Seesandra V;
- Titz, Björn;
- Goll, Johannes;
- Parrish, Jodi R;
- Wohlbold, Katrin;
- McKevitt, Matthew T;
- Palzkill, Timothy;
- Mori, Hirotada;
- Finley, Russell L;
- Uetz, Peter
Publication type:
Article
MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions.
Published in:
Bioinformatics, 2008, v. 24, n. 22, p. 2622, doi. 10.1093/bioinformatics/btn481
By:
- Seesandra V. Rajagopala;
- Johannes Goll;
- N.D. Deve Gowda;
- Kumar C. Sunil;
- Björn Titz;
- Arnab Mukherjee;
- Sharmila S. Mary;
- Naresh Raviswaran;
- Chetan S. Poojari;
- Srinivas Ramachandra;
- Svetlana Shtivelband;
- Stephen M. Blazie;
- Julia Hofmann;
- Peter Uetz
Publication type:
Article
MPIDB: the microbial protein interaction database.
Published in:
Bioinformatics, 2008, v. 24, n. 15, p. 1743, doi. 10.1093/bioinformatics/btn285
By:
- Johannes Goll;
- Seesandra V. Rajagopala;
- Shen C. Shiau;
- Hank Wu;
- Brian T. Lamb;
- Peter Uetz
Publication type:
Article
Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19810-4
By:
- Strickland, Britton A.;
- Rajagopala, Seesandra V.;
- Kamali, Arash;
- Shilts, Meghan H.;
- Pakala, Suman B.;
- Boukhvalova, Marina S.;
- Yooseph, Shibu;
- Blanco, Jorge C. G.;
- Das, Suman R.
Publication type:
Article
Severe COVID-19 Is Associated With an Altered Upper Respiratory Tract Microbiome.
Published in:
Frontiers in Cellular & Infection Microbiology, 2022, p. 1, doi. 10.3389/fcimb.2021.781968
By:
- Shilts, Meghan H.;
- Rosas-Salazar, Christian;
- Strickland, Britton A.;
- Kimura, Kyle S.;
- Asad, Mohammad;
- Sehanobish, Esha;
- Freeman, Michael H.;
- Wessinger, Bronson C.;
- Gupta, Veerain;
- Brown, Hunter M.;
- Boone, Helen H.;
- Patel, Viraj;
- Barbi, Mali;
- Bottalico, Danielle;
- O'Neill, Meaghan;
- Akbar, Nadeem;
- Rajagopala, Seesandra V.;
- Mallal, Simon;
- Phillips, Elizabeth;
- Turner, Justin H.
Publication type:
Article
Salivary immunoinflammatory proteins identify children with eosinophilic esophagitis.
Published in:
Allergy, 2024, v. 79, n. 7, p. 1969, doi. 10.1111/all.16040
By:
- Hiremath, Girish;
- Wang, Yu;
- Correa, Hernan;
- Sheng, Quanhu;
- Rajagopala, Seesandra V.
Publication type:
Article
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2965-y
By:
- Rajagopala, Seesandra V.;
- Yooseph, Shibu;
- Harkins, Derek M.;
- Moncera, Kelvin J.;
- Zabokrtsky, Keri B.;
- Torralba, Manolito G.;
- Tovchigrechko, Andrey;
- Highlander, Sarah K.;
- Pieper, Rembert;
- Sender, Leonard;
- Nelson, Karen E.
Publication type:
Article
Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2351-1
By:
- Wallqvist, Anders;
- Memišević, Vesna;
- Zavaljevski, Nela;
- Pieper, Rembert;
- Rajagopala, Seesandra V.;
- Keehwan Kwon;
- Chenggang Yu;
- Hoover, Timothy A.;
- Reifman, Jaques
Publication type:
Article
The Binary Protein Interactome of Treponema pallidum - The Syphilis Spirochete.
Published in:
PLoS ONE, 2008, v. 3, n. 5, p. 1, doi. 10.1371/journal.pone.0002292
By:
- Titz, Björn;
- Rajagopala, Seesandra V.;
- Goll, Johannes;
- Häuser, Roman;
- McKevitt, Matthew T.;
- Palzkill, Timothy;
- Uetz, Peter
Publication type:
Article
Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.
Published in:
Microbial Ecology, 2020, v. 79, n. 4, p. 1034, doi. 10.1007/s00248-019-01448-x
By:
- Rajagopala, Seesandra V.;
- Singh, Harinder;
- Yu, Yanbao;
- Zabokrtsky, Keri B.;
- Torralba, Manolito G.;
- Moncera, Kelvin J.;
- Frank, Bryan;
- Pieper, Rembert;
- Sender, Leonard;
- Nelson, Karen E.
Publication type:
Article
Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77289-3
By:
- Shilts, Meghan H.;
- Rosas-Salazar, Christian;
- Lynch, Christian E.;
- Tovchigrechko, Andrey;
- Boone, Helen H.;
- Russell, Patty B.;
- Connolly, Alexandra S.;
- Costello, Kaitlin M.;
- McCollum, Megan D.;
- Mai, Annie;
- Wiggins, Derek A.;
- Rajagopala, Seesandra V.;
- Yooseph, Shibu;
- Peebles, R. Stokes;
- Hartert, Tina V.;
- Das, Suman R.
Publication type:
Article
Transcriptional activators in yeast.
Published in:
Nucleic Acids Research, 2006, v. 34, n. 3, p. 955, doi. 10.1093/nar/gkj493
By:
- Titz, Björn;
- Thomas, Sindhu;
- Rajagopala, Seesandra V.;
- Chiba, Tomoko;
- Ito, Takashi;
- Uetz, Peter
Publication type:
Article
Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.
Published in:
PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0188071
By:
- Wallqvist, Anders;
- Wang, Hao;
- Zavaljevski, Nela;
- Memišević, Vesna;
- Kwon, Keehwan;
- Pieper, Rembert;
- Rajagopala, Seesandra V.;
- Reifman, Jaques
Publication type:
Article
The binary protein-protein interaction landscape of Escherichia coli.
Published in:
Nature Biotechnology, 2014, v. 32, n. 3, p. 285, doi. 10.1038/nbt.2831
By:
- Rajagopala, Seesandra V;
- Sikorski, Patricia;
- Kumar, Ashwani;
- Mosca, Roberto;
- Vlasblom, James;
- Arnold, Roland;
- Franca-Koh, Jonathan;
- Pakala, Suman B;
- Phanse, Sadhna;
- Ceol, Arnaud;
- Häuser, Roman;
- Siszler, Gabriella;
- Wuchty, Stefan;
- Emili, Andrew;
- Babu, Mohan;
- Aloy, Patrick;
- Pieper, Rembert;
- Uetz, Peter
Publication type:
Article
The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology.
Published in:
BMC Genomics, 2010, v. 11, p. 470, doi. 10.1186/1471-2164-11-470
By:
- Rajagopala, Seesandra V.;
- Yamamoto, Natsuko;
- Zweifel, Adrienne E.;
- Nakamichi, Tomoko;
- Hsi-Kuang Huang;
- Mendez-Rios, Jorge David;
- Franca-Koh, Jonathan;
- Boorgula, Meher Preethi;
- Fujita, Kazutoshi;
- Suzuki, Ken-ichirou;
- Hu, James C.;
- Wanner, Barry L.;
- Mori, Hirotada;
- Uetz, Peter
Publication type:
Article
Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms.
Published in:
PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004088
By:
- Memišević, Vesna;
- Zavaljevski, Nela;
- Rajagopala, Seesandra V.;
- Kwon, Keehwan;
- Pieper, Rembert;
- DeShazer, David;
- Reifman, Jaques;
- Wallqvist, Anders
Publication type:
Article

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