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Prediction of Early Adverse Events After THA: A Comparison of Different Machine‐Learning Strategies Based on 262,356 Observations From the Nordic Arthroplasty Register Association (NARA) Dataset.
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- ACR Open Rheumatology, 2024, v. 6, n. 10, p. 669, doi. 10.1002/acr2.11709
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- Article
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35564-z
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- Article
RepViz: a replicate-driven R tool for visualizing genomic regions.
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- BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4473-z
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- Article
Differential ATAC-seq and ChIP-seq peak detection using ROTS.
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- NAR Genomics & Bioinformatics, 2021, v. 3, n. 3, p. 1, doi. 10.1093/nargab/lqab059
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- Article
Long Intergenic Noncoding RNA MIAT as a Regulator of Human Th17 Cell Differentiation.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.856762
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- Article
ROTS: reproducible RNA-seq biomarker detector––prognostic markers for clear cell renal cell cancer.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. e1, doi. 10.1093/nar/gkv806
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- Article
A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.
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- Nucleic Acids Research, 2013, v. 41, n. 10, p. e110, doi. 10.1093/nar/gkt229
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- Article
Optimized detection of transcription factor-binding sites in ChIP-seq experiments.
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- Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr839
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- Article
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07686-z
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- Article
Targeted serum proteomics of longitudinal samples from newly diagnosed youth with type 1 diabetes distinguishes markers of disease and C-peptide trajectory.
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- Diabetologia, 2023, v. 66, n. 11, p. 1983, doi. 10.1007/s00125-023-05974-9
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- Article
Umbilical cord blood DNA methylation in children who later develop type 1 diabetes.
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- Diabetologia, 2022, v. 65, n. 9, p. 1534, doi. 10.1007/s00125-022-05726-1
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- Article
Early DNA methylation changes in children developing beta cell autoimmunity at a young age.
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- Diabetologia, 2022, v. 65, n. 5, p. 844, doi. 10.1007/s00125-022-05657-x
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- Article
Enterovirus-associated changes in blood transcriptomic profiles of children with genetic susceptibility to type 1 diabetes.
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- Diabetologia, 2018, v. 61, n. 2, p. 381, doi. 10.1007/s00125-017-4460-7
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- Article
ECCB2024: The 23rd European Conference on Computational Biology.
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- Bioinformatics, 2024, v. 40, p. ii1, doi. 10.1093/bioinformatics/btae422
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- Article
Cell-connectivity-guided trajectory inference from single-cell data.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad515
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- Publication type:
- Article
scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1328, doi. 10.1093/bioinformatics/btab831
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- Article
Stable Iterative Variable Selection.
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- Bioinformatics, 2021, v. 37, n. 24, p. 4810, doi. 10.1093/bioinformatics/btab501
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- Article
ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data.
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- Bioinformatics, 2021, v. 37, n. 8, p. 1107, doi. 10.1093/bioinformatics/btaa919
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- Article
Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets.
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- Briefings in Bioinformatics, 2009, v. 10, n. 5, p. 547, doi. 10.1093/bib/bbp033
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- Article
Erratum: Longitudinal modeling of ultrasensitive and traditional prostate-specific antigen and prediction of biochemical recurrence after radical prostatectomy.
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- Scientific Reports, 2017, p. 40835, doi. 10.1038/srep40835
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- Publication type:
- Article
Longitudinal modeling of ultrasensitive and traditional prostate-specific antigen and prediction of biochemical recurrence after radical prostatectomy.
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- Scientific Reports, 2016, p. 36161, doi. 10.1038/srep36161
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- Article
Mining proteomic data for biomedical research.
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- WIREs: Data Mining & Knowledge Discovery, 2012, v. 2, n. 1, p. 1, doi. 10.1002/widm.45
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- Article
A Note on an Exon-Based Strategy to Identify Differentially Expressed Genes in RNA-Seq Experiments.
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- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0115964
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- Article
Analysis of Time-Resolved Gene Expression Measurements across Individuals.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082340
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- Article
Melanoma-Associated Cancer-Testis Antigen 16 (CT16) Regulates the Expression of Apoptotic and Antiapoptotic Genes and Promotes Cell Survival.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045382
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- Article
Predicting Quantitative Genetic Interactions by Means of Sequential Matrix Approximation.
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- PLoS ONE, 2008, v. 3, n. 9, p. 1, doi. 10.1371/journal.pone.0003284
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- Article
Statistical detection of quantitative protein biomarkers provides insights into signaling networks deregulated in acute myeloid leukemia.
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- Proteomics, 2014, v. 14, n. 21/22, p. 2443, doi. 10.1002/pmic.201300460
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- Article
Predicting Skeletal Muscle and Whole-Body Insulin Sensitivity Using NMR-Metabolomic Profiling.
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- Journal of the Endocrine Society, 2020, v. 4, n. 4, p. N.PAG, doi. 10.1210/jendso/bvaa026
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- Article
HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma.
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- Cancer & Metabolism, 2017, v. 5, p. 1, doi. 10.1186/s40170-017-0167-y
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- Article
Lack of androgen receptor SUMOylation results in male infertility due to epididymal dysfunction.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08730-z
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- Article
A practical comparison of methods for detecting transcriptionfactor binding sites in ChIP-seq experiments.
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- BMC Genomics, 2009, v. 10, p. 618, doi. 10.1186/1471-2164-10-618
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- Article
Missing value imputation improves clustering and interpretation of gene expression microarray data.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-202
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- Article
Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.
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- PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009269
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- Article
Selective loss of kisspeptin signaling in oocytes causes progressive premature ovulatory failure.
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- 2022
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- Publication type:
- journal article
Improved risk prediction of chemotherapy‐induced neutropenia—model development and validation with real‐world data.
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- Cancer Medicine, 2022, v. 11, n. 3, p. 654, doi. 10.1002/cam4.4465
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- Article
Likelihood contrasts: a machine learning algorithm for binary classification of longitudinal data.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-57924-9
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- Article
Integrating probe-level expression changes across generations of Affymetrix arrays.
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- Nucleic Acids Research, 2005, v. 33, n. 22, p. e193, doi. 10.1093/nar/gni193
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- Article
Decidualization of Human Endometrial Stromal Fibroblasts is a Multiphasic Process Involving Distinct Transcriptional Programs.
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- Reproductive Sciences, 2019, v. 26, n. 3, p. 323, doi. 10.1177/1933719118802056
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- Article
Phenotypic profiling of human induced regulatory T cells at early differentiation: insights into distinct immunosuppressive potential.
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- Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05429-3
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- Article
Disruption of HSD17B12 in mouse hepatocytes leads to reduced body weight and defect in the lipid droplet expansion associated with microvesicular steatosis.
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- FASEB Journal, 2024, v. 38, n. 17, p. 1, doi. 10.1096/fj.202400333RR
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- Article
Protein synthesis is suppressed in sporadic and familial Parkinson's disease by LRRK2.
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- FASEB Journal, 2020, v. 34, n. 11, p. 14217, doi. 10.1096/fj.202001046R
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- Article
Hydroxysteroid (17β) dehydrogenase 13 deficiency triggers hepatic steatosis and inflammation in mice.
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- FASEB Journal, 2018, v. 32, n. 6, p. 3434, doi. 10.1096/fj.201700914R
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- Article
Integrative omics approaches provide biological and clinical insights: examples from mitochondrial diseases.
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- 2020
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- Publication type:
- journal article
Integrative omics approaches provide biological and clinical insights: examples from mitochondrial diseases.
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- Journal of Clinical Investigation, 2020, v. 130, n. 1, p. 20, doi. 10.1172/JCI129202
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- Article
Benchmarking methods for detecting differential states between conditions from multi-subject single-cell RNA-seq data.
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- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac286
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- Article
Correction to: PhosPiR: an automated phosphoproteomic pipeline in R.
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- Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac153
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- Article
PhosPiR: an automated phosphoproteomic pipeline in R.
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- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab510
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- Article
Estimating cell type-specific differential expression using deconvolution.
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- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab433
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- Article
Systematic evaluation of differential splicing tools for RNA-seq studies.
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- Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2052, doi. 10.1093/bib/bbz126
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- Article
A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation.
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- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1344, doi. 10.1093/bib/bbx054
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- Article