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A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A.
- Published in:
- Journal of Antimicrobial Chemotherapy (JAC), 2010, v. 65, n. 8, p. 1631, doi. 10.1093/jac/dkq175
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- Publication type:
- Article
Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization.
- Published in:
- Open Forum Infectious Diseases, 2023, v. 10, p. S38, doi. 10.1093/ofid/ofad044
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- Publication type:
- Article
Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China.
- Published in:
- 2020
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- Publication type:
- journal article
Multidrug-Resistant Salmonella enterica Serotype Typhi, Gulf of Guinea Region, Africa.
- Published in:
- Emerging Infectious Diseases, 2015, v. 21, n. 4, p. 655, doi. 10.3201/eid2104.141355
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- Publication type:
- Article
A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38061-z
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- Publication type:
- Article
A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35136-1
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- Publication type:
- Article
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30717-6
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- Publication type:
- Article
Protection conferred by typhoid fever against recurrent typhoid fever in urban Kolkata.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 8, p. 1, doi. 10.1371/journal.pntd.0008530
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- Publication type:
- Article
GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07019-6
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- Publication type:
- Article
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae.
- Published in:
- PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1008114
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- Publication type:
- Article
School Physical Activity Policy Assessment.
- Published in:
- Journal of Physical Activity & Health, 2013, v. 10, n. 4, p. 496, doi. 10.1123/jpah.10.4.496
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- Publication type:
- Article
A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.14003
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- Publication type:
- Article
Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2016, v. 6, p. 1, doi. 10.3389/fcimb.2016.00141
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- Publication type:
- Article
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24448-3
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- Publication type:
- Article
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23091-2
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- Publication type:
- Article
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22700-4
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- Publication type:
- Article
ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting.
- Published in:
- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01103-0
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- Publication type:
- Article
The impact of genomics on precision public health: beyond the pandemic.
- Published in:
- 2021
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- Publication type:
- Editorial
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.
- Published in:
- Nature Genetics, 2013, v. 45, n. 10, p. 1176, doi. 10.1038/ng.2744
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- Publication type:
- Article
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.
- Published in:
- Nature Genetics, 2012, v. 44, n. 9, p. 1056, doi. 10.1038/ng.2369
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- Publication type:
- Article
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.
- Published in:
- Nature Genetics, 2008, v. 40, n. 8, p. 987, doi. 10.1038/ng.195
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- Publication type:
- Article
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.
- Published in:
- BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1210-5
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- Publication type:
- Article
District and School Physical Education Policies: Implications for Physical Education and Recess Time.
- Published in:
- Annals of Behavioral Medicine, 2013, v. 45, p. 131, doi. 10.1007/s12160-012-9427-9
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- Publication type:
- Article
Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population.
- Published in:
- Scientific Reports, 2016, p. 29316, doi. 10.1038/srep29316
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- Publication type:
- Article
A linear plasmid truncation induces unidirectional flagellar phase change in H:z66 positive Salmonella Typhi.
- Published in:
- Molecular Microbiology, 2007, v. 66, n. 5, p. 1207, doi. 10.1111/j.1365-2958.2007.05995.x
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- Publication type:
- Article
Trycycler: consensus long-read assemblies for bacterial genomes.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02483-z
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- Publication type:
- Article
Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program.
- Published in:
- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 1, p. 1, doi. 10.1371/journal.pntd.0005274
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- Publication type:
- Article
Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa.
- Published in:
- PLoS Neglected Tropical Diseases, 2016, v. 10, n. 9, p. 1, doi. 10.1371/journal.pntd.0004781
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- Publication type:
- Article
The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia.
- Published in:
- PLoS Neglected Tropical Diseases, 2016, v. 10, n. 6, p. 1, doi. 10.1371/journal.pntd.0004785
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- Publication type:
- Article
Characterization of the <i>yehUT</i> Two-Component Regulatory System of <i>Salmonella enterica</i> Serovar Typhi and Typhimurium.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0084567
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- Publication type:
- Article
A Bioinformatic Strategy for the Detection, Classification and Analysis of Bacterial Autotransporters.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043245
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- Publication type:
- Article
The Burden and Characteristics of Enteric Fever at a Healthcare Facility in a Densely Populated Area of Kathmandu.
- Published in:
- PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013988
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- Publication type:
- Article
Ocrelizumab: A New B-cell Therapy for Relapsing Remitting and Primary Progressive Multiple Sclerosis.
- Published in:
- 2018
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- Publication type:
- journal article
Community Interventions to Increase Stroke Preparedness and Acute Stroke Treatment Rates.
- Published in:
- Current Atherosclerosis Reports, 2017, v. 19, n. 12, p. 1, doi. 10.1007/s11883-017-0695-5
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- Publication type:
- Article
High-throughput bacterial SNP typing identifiesdistinct clusters of Salmonella Typhi causingtyphoid in Nepalese children.
- Published in:
- BMC Infectious Diseases, 2010, v. 10, n. 1, p. 144, doi. 10.1186/1471-2334-10-144
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- Publication type:
- Article
The sensitivity of real-time PCR amplification targeting invasive Salmonella serovars in biological specimens.
- Published in:
- BMC Infectious Diseases, 2010, v. 10, n. 1, p. 125, doi. 10.1186/1471-2334-10-125
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- Publication type:
- Article
Impact of insertion sequences on convergent evolution of Shigella species.
- Published in:
- PLoS Genetics, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pgen.1008931
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- Publication type:
- Article
Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67852
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- Publication type:
- Article
Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy.
- Published in:
- PLoS Neglected Tropical Diseases, 2018, v. 12, n. 3, p. 1, doi. 10.1371/journal.pntd.0006408
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- Publication type:
- Article
Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-36
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- Publication type:
- Article
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009802
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- Publication type:
- Article
Identifying adaptive differences could provide insight.
- Published in:
- 2009
- By:
- Publication type:
- Letter
Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production.
- Published in:
- Microorganisms, 2019, v. 7, n. 9, p. 299, doi. 10.3390/microorganisms7090299
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- Publication type:
- Article
Beginner's guide to comparative bacterial genome analysis using next-generation sequence data.
- Published in:
- Microbial Informatics & Experimentation, 2013, v. 3, n. 1, p. 1, doi. 10.1186/2042-5783-3-2
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- Publication type:
- Article
Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 2, p. 1, doi. 10.1371/journal.pntd.0008036
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- Publication type:
- Article
Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers.
- Published in:
- PLoS Neglected Tropical Diseases, 2019, v. 13, n. 9, p. 1, doi. 10.1371/journal.pntd.0007620
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- Publication type:
- Article
What Do We Tell the Children? Contrasting the Disclosure Choices of Two HD Families Regarding Risk Statusand Predictive Genetic Testing.
- Published in:
- Journal of Genetic Counseling, 2006, v. 15, n. 4, p. 253, doi. 10.1007/s10897-006-9021-z
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- Publication type:
- Article
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid.
- Published in:
- Nature Communications, 2016, v. 7, n. 10, p. 12827, doi. 10.1038/ncomms12827
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- Publication type:
- Article
Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 5, p. 1267, doi. 10.1093/gbe/evv062
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- Publication type:
- Article
Adaptive Change Inferred from Genomic Population Analysis of the ST93 Epidemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus.
- Published in:
- Genome Biology & Evolution, 2014, v. 6, n. 2, p. 366, doi. 10.1093/gbe/evu022
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- Publication type:
- Article