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- Title
Multilocus sequence analysis and identification of mating‐type idiomorphs distribution in Magnaporthe oryzae population of Karnataka state of India.
- Authors
Chittaragi, Amoghavarsha; Pramesh, Devanna; Naik, Ganesha R.; Naik, Manjunath K.; Yadav, Manoj K.; Ngangkham, Umakanta; Siddepalli, Manjunatha E.; Nayak, Anusha; Prasannakumar, Muthukapalli K.; Eranna, Chidanandappa
- Abstract
Aims: To investigate the genetic diversity, population structure and mating‐type distribution among the eco‐distinct isolates of Magnaporthe oryzae from Karnataka, India. Methods and Results: A set of 38 isolates of M. oryzae associated with leaf blast disease of rice were collected from different rice ecosystems of Karnataka, India, and analysed for their diversity at actin, β‐tubulin, calmodulin, translation elongation factor 1‐α (TEF‐1‐α), and internal transcribed spacer (ITS) genes/region. The isolates were grouped into two clusters based on the multilocus sequence diversity, the majority being in cluster‐IA (n = 37), and only one isolate formed cluster‐IB. Population structure was analysed using 123 SNP data to understand the genetic relationship. Based on K = 2 and ancestry threshold of >70%, blast strains were classified into two subgroups (SG1 and SG2) whereas, based on K = 4 and ancestry threshold of >70%, blast strains were classified into four subgroups (SG1, SG2, SG3 and SG4). We have identified 13 haplotype groups where haplotype group 2 was predominant (n = 20) in the population. The Tajima's and Fu's Fs neutrality tests exhibited many rare alleles. Further, the mating‐type analysis was also performed using MAT1 gene‐specific primers to find the potentiality of sexual reproduction in different ecosystems. The majority of the isolates (54.5%) had MAT1‐2 idiomorph, whereas 45.5% of the isolates possessed MAT1‐1 idiomorph. Conclusions: The present study found the genetically homogenous population of M. oryzae by multilocus sequence analysis. Both mating types, MAT1‐1 and MAT1‐2, were found within the M. oryzae population of Karnataka. Significance and impact of study: The study on the population structure and sexual mating behaviour of M. oryzae is important in developing region‐specific blast‐resistant rice cultivars. This is the first report of MAT1 idiomorphs distribution in the M. oryzae population in any Southern state of India.
- Subjects
KARNATAKA (India); INDIA; PYRICULARIA oryzae; SEQUENCE analysis; RICE blast disease; HAPLOTYPES; GENETIC variation; HUMAN sexuality; CULTIVARS; GENETIC translation
- Publication
Journal of Applied Microbiology, 2022, Vol 132, Issue 6, p4413
- ISSN
1364-5072
- Publication type
Article
- DOI
10.1111/jam.15546