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- Title
Hive Panel Explorer: an interactive network visualization tool.
- Authors
Perez, Sarah E I; Hahn, Aria S; Krzywinski, Martin; Hallam, Steven J
- Abstract
Motivation Networks are used to relate topological structure to system dynamics and function, particularly in ecology systems biology. Network analysis is often guided or complemented by data-driven visualization. Hive one of many network visualizations, distinguish themselves as providing a general, consistent and coherent rule-based representation to motivate hypothesis development and testing. Results Here, we present HyPE, H ive P anel E xplorer, a software application that creates a panel of interactive hive plots. HyPE enables network exploration based on user-driven layout rules and parameter combinations for simultaneous of multiple network views. We demonstrate HyPE's features by exploring a microbial co-occurrence network constructed from forest soil microbiomes. Availability and implementation HyPE is available under the GNU license: https://github.com/hallamlab/HivePanelExplorer. Supplementary information Supplementary data are available at Bioinformatics online.
- Subjects
VISUALIZATION; FOREST soils; SYSTEMS biology; INTERNET servers; APPLICATION software; SYSTEM dynamics
- Publication
Bioinformatics, 2021, Vol 37, Issue 3, p436
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btaa683