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A machine learning approach to optimizing cell-free DNA sequencing panels: with an application to prostate cancer.
Published in:
2020
By:
- Cario, Clinton L.;
- Chen, Emmalyn;
- Leong, Lancelote;
- Emami, Nima C.;
- Lopez, Karen;
- Tenggara, Imelda;
- Simko, Jeffry P.;
- Friedlander, Terence W.;
- Li, Patricia S.;
- Paris, Pamela L.;
- Carroll, Peter R.;
- Witte, John S.
Publication type:
journal article
Author Correction: Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms.
Published in:
2019
By:
- Emami, Nima C.;
- Kachuri, Linda;
- Meyers, Travis J.;
- Das, Rajdeep;
- Hoffman, Joshua D.;
- Hoffmann, Thomas J.;
- Hu, Donglei;
- Shan, Jun;
- Feng, Felix Y.;
- Ziv, Elad;
- Van Den Eeden, Stephen K.;
- Witte, John S.
Publication type:
Correction Notice
Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10808-7
By:
- Emami, Nima C.;
- Kachuri, Linda;
- Meyers, Travis J.;
- Das, Rajdeep;
- Hoffman, Joshua D.;
- Hoffmann, Thomas J.;
- Hu, Donglei;
- Shan, Jun;
- Feng, Felix Y.;
- Ziv, Elad;
- Van Den Eeden, Stephen K.;
- Witte, John S.
Publication type:
Article
The Accuracy of Visceral Adiposity Index for the Screening of Metabolic Syndrome: A Systematic Review and Meta-Analysis.
Published in:
International Journal of Endocrinology, 2021, p. 1, doi. 10.1155/2021/6684627
By:
- Bijari, Moniba;
- Jangjoo, Sara;
- Emami, Nima;
- Raji, Sara;
- Mottaghi, Mahdi;
- Moallem, Roya;
- Jangjoo, Ali;
- Saberi, Amin
Publication type:
Article
A deep learned nanowire segmentation model using synthetic data augmentation.
Published in:
NPJ Computational Materials, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41524-022-00767-x
By:
- Lin, Binbin;
- Emami, Nima;
- Santos, David A.;
- Luo, Yuting;
- Banerjee, Sarbajit;
- Xu, Bai-Xiang
Publication type:
Article
The Probiotic Bacillus subtilis MB40 Improves Immunity in a Porcine Model of Listeriosis.
Published in:
Microorganisms, 2023, v. 11, n. 8, p. 2110, doi. 10.3390/microorganisms11082110
By:
- Garvey, Sean M.;
- Emami, Nima K.;
- Guice, Justin L.;
- Sriranganathan, Nammalwar;
- Penet, Christopher;
- Rhoads, Robert P.;
- Spears, Jessica L.;
- Dalloul, Rami A.;
- El-Kadi, Samer W.
Publication type:
Article
Inclusion of Quillaja Saponin Clarity Q Manages Growth Performance, Immune Response, and Nutrient Transport of Broilers during Subclinical Necrotic Enteritis.
Published in:
Microorganisms, 2023, v. 11, n. 8, p. 1894, doi. 10.3390/microorganisms11081894
By:
- Blue, Candice E. C.;
- Emami, Nima K.;
- White, Mallory B.;
- Cantley, Staci;
- Dalloul, Rami A.
Publication type:
Article
Necrotic Enteritis in Broiler Chickens: The Role of Tight Junctions and Mucosal Immune Responses in Alleviating the Effect of the Disease.
Published in:
Microorganisms, 2019, v. 7, n. 8, p. 231, doi. 10.3390/microorganisms7080231
By:
- Emami, Nima K.;
- Calik, Ali;
- White, Mallory B.;
- Young, Mark;
- Dalloul, Rami A.
Publication type:
Article
Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 14248, doi. 10.1038/ncomms14248
By:
- Hoffmann, Thomas J.;
- Passarelli, Michael N.;
- Graff, Rebecca E.;
- Emami, Nima C.;
- Sakoda, Lori C.;
- Jorgenson, Eric;
- Habel, Laurel A.;
- Shan, Jun;
- Ranatunga, Dilrini K.;
- Quesenberry, Charles P.;
- Chao, Chun R.;
- Ghai, Nirupa R.;
- Aaronson, David;
- Presti, Joseph;
- Nordström, Tobias;
- Wang, Zhaoming;
- Berndt, Sonja I.;
- Chanock, Stephen J.;
- Mosley, Jonathan D.;
- Klein, Robert J.
Publication type:
Article
Tissue Sources for Accurate Measurement of Germline DNA Genotypes in Prostate Cancer Patients Treated With Radical Prostatectomy.
Published in:
Prostate, 2017, v. 77, n. 4, p. 425, doi. 10.1002/pros.23283
By:
- Emami, Nima C.;
- Leong, Lancelote;
- Wan, Eunice;
- Van Blarigan, Erin L.;
- Cooperberg, Matthew R.;
- Tenggara, Imelda;
- Carroll, Peter R.;
- Chan, June M.;
- Witte, John S.;
- Simko, Jeffry P.
Publication type:
Article
Radical Response: Effects of Heat Stress-Induced Oxidative Stress on Lipid Metabolism in the Avian Liver.
Published in:
Antioxidants, 2021, v. 10, n. 1, p. 35, doi. 10.3390/antiox10010035
By:
- Emami, Nima K.;
- Jung, Usuk;
- Voy, Brynn;
- Dridi, Sami
Publication type:
Article
Association between Thyroid Hormones and Non-alcoholic Fatty Liver Disease and Non-alcoholic Steatohepatitis in Obese Individuals Undergoing Bariatric Surgery.
Published in:
Middle East Journal of Digestive Diseases, 2022, v. 14, n. 4, p. 410, doi. 10.34172/mejdd.2022.302
By:
- Ganjooei, Narges Ashraf;
- Jamialahmadi, Tannaz;
- Nematy, Mohsen;
- Shah, Najeeb Zaheer;
- Jangjoo, Sara;
- Emami, Nima;
- Jangjoo, Ali;
- Faridnia, Reyhaneh;
- Alidadi, Mona;
- Sathyapalan, Thozhukat;
- Sahebkar, Amirhossein
Publication type:
Article
Heat Stress and Feed Restriction Distinctly Affect Performance, Carcass and Meat Yield, Intestinal Integrity, and Inflammatory (Chemo)Cytokines in Broiler Chickens.
Published in:
Frontiers in Physiology, 2021, v. 12, p. 1, doi. 10.3389/fphys.2021.707757
By:
- Emami, Nima K.;
- Greene, Elizabeth S.;
- Kogut, Michael H.;
- Dridi, Sami
Publication type:
Article
Diagnostic Value of Non-invasive Liver Function Tests in Liver Fibrosis and Changes in These Parameters Post-metabolic Surgery.
Published in:
Obesity Surgery, 2023, v. 33, n. 2, p. 548, doi. 10.1007/s11695-022-06416-y
By:
- Jangjoo, Sara;
- Emami, Nima;
- Sahranavard, Mehrdad;
- Shah, Najeeb Z.;
- Alidadi, Mona;
- Baratzadeh, Fatemeh;
- Sathyapalan, Thozhukat;
- Eid, Ali H.;
- Jangjoo, Ali;
- Jamialahmadi, Tannaz;
- Sahebkar, Amirhossein
Publication type:
Article
Phytogenic Water Additives Improve Broiler Growth Performance via Modulation of Intermediary Metabolism-Related Signaling Pathways.
Published in:
Animals (2076-2615), 2021, v. 11, n. 3, p. 750, doi. 10.3390/ani11030750
By:
- Flees, Joshua J.;
- Emami, Nima K.;
- Greene, Elizabeth;
- Ganguly, Bhaskar;
- Dridi, Sami;
- Pérez, Jose Francisco
Publication type:
Article
Cross-cancer evaluation of polygenic risk scores for 16 cancer types in two large cohorts.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21288-z
By:
- Graff, Rebecca E.;
- Cavazos, Taylor B.;
- Thai, Khanh K.;
- Kachuri, Linda;
- Rashkin, Sara R.;
- Hoffman, Joshua D.;
- Alexeeff, Stacey E.;
- Blatchins, Maruta;
- Meyers, Travis J.;
- Leong, Lancelote;
- Tai, Caroline G.;
- Emami, Nima C.;
- Corley, Douglas A.;
- Kushi, Lawrence H.;
- Ziv, Elad;
- Van Den Eeden, Stephen K.;
- Jorgenson, Eric;
- Hoffmann, Thomas J.;
- Habel, Laurel A.;
- Witte, John S.
Publication type:
Article
Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18246-6
By:
- Rashkin, Sara R.;
- Graff, Rebecca E.;
- Kachuri, Linda;
- Thai, Khanh K.;
- Alexeeff, Stacey E.;
- Blatchins, Maruta A.;
- Cavazos, Taylor B.;
- Corley, Douglas A.;
- Emami, Nima C.;
- Hoffman, Joshua D.;
- Jorgenson, Eric;
- Kushi, Lawrence H.;
- Meyers, Travis J.;
- Van Den Eeden, Stephen K.;
- Ziv, Elad;
- Habel, Laurel A.;
- Hoffmann, Thomas J.;
- Sakoda, Lori C.;
- Witte, John S.
Publication type:
Article
Cis-eQTL-based trans-ethnic meta-analysis reveals novel genes associated with breast cancer risk.
Published in:
PLoS Genetics, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pgen.1006690
By:
- Hoffman, Joshua D.;
- Graff, Rebecca E.;
- Emami, Nima C.;
- Tai, Caroline G.;
- Passarelli, Michael N.;
- Donglei Hu;
- Huntsman, Scott;
- Hadley, Dexter;
- Leong, Lancelote;
- Majumdar, Arunabha;
- Zaitlen, Noah;
- Ziv, Elad;
- Witte, John S.
Publication type:
Article

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