Found: 14

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  • Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB.

    Published in:
    Metabolites (2218-1989), 2021, v. 11, n. 1, p. 48, doi. 10.3390/metabo11010048
    By:
    • Feuermann, Marc;
    • Boutet, Emmanuel;
    • Morgat, Anne;
    • Axelsen, Kristian B.;
    • Bansal, Parit;
    • Bolleman, Jerven;
    • de Castro, Edouard;
    • Coudert, Elisabeth;
    • Gasteiger, Elisabeth;
    • Géhant, Sébastien;
    • Lieberherr, Damien;
    • Lombardot, Thierry;
    • Neto, Teresa B.;
    • Pedruzzi, Ivo;
    • Poux, Sylvain;
    • Pozzato, Monica;
    • Redaschi, Nicole;
    • Bridge, Alan
    Publication type:
    Article

  • Updates in Rhea: SPARQLing biochemical reaction data.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D596, doi. 10.1093/nar/gky876
    By:
    • Lombardot, Thierry;
    • Morgat, Anne;
    • Axelsen, Kristian B;
    • Aimo, Lucila;
    • Hyka-Nouspikel, Nevila;
    • Niknejad, Anne;
    • Ignatchenko, Alex;
    • Xenarios, Ioannis;
    • Coudert, Elisabeth;
    • Redaschi, Nicole;
    • Bridge, Alan
    Publication type:
    Article

  • Updates in Rhea -- an expert curated resource of biochemical reactions.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D415, doi. 10.1093/nar/gkw990
    By:
    • Morgat, Anne;
    • Lombardot, Thierry;
    • Axelsen, Kristian B.;
    • Aimo, Lucila;
    • Niknejad, Anne;
    • Hyka-Nouspikel, Nevila;
    • Coudert, Elisabeth;
    • Pozzato, Monica;
    • Pagni, Marco;
    • Moretti, Sébastien;
    • Rosanoff, Steven;
    • Onwubiko, Joseph;
    • Bougueleret, Lydie;
    • Xenarios, Ioannis;
    • Redaschi, Nicole;
    • Bridge, Alan
    Publication type:
    Article

  • HAMAP in 2015: updates to the protein family classification and annotation system.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D1064, doi. 10.1093/nar/gku1002
    By:
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Auchincloss, Andrea H.;
    • Coudert, Elisabeth;
    • Keller, Guillaume;
    • de Castro, Edouard;
    • Baratin, Delphine;
    • Cuche, Béatrice A.;
    • Bougueleret, Lydie;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Xenarios, Ioannis;
    • Bridge, Alan
    Publication type:
    Article

  • Updates in Rhea—a manually curated resource of biochemical reactions.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. D1, p. D459, doi. 10.1093/nar/gku961
    By:
    • Morgat, Anne;
    • Axelsen, Kristian B.;
    • Lombardot, Thierry;
    • Alcántara, Rafael;
    • Aimo, Lucila;
    • Zerara, Mohamed;
    • Niknejad, Anne;
    • Belda, Eugeni;
    • Hyka-Nouspikel, Nevila;
    • Coudert, Elisabeth;
    • Redaschi, Nicole;
    • Bougueleret, Lydie;
    • Steinbeck, Christoph;
    • Xenarios, Ioannis;
    • Bridge, Alan
    Publication type:
    Article

  • HAMAP in 2013, new developments in the protein family classification and annotation system.

    Published in:
    Nucleic Acids Research, 2013, v. 41, p. D584, doi. 10.1093/nar/gks1157
    By:
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Auchincloss, Andrea H.;
    • Coudert, Elisabeth;
    • Keller, Guillaume;
    • de Castro, Edouard;
    • Baratin, Delphine;
    • Cuche, Béatrice A.;
    • Bougueleret, Lydie;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Xenarios, Ioannis;
    • Bridge, Alan
    Publication type:
    Article

  • Rhea—a manually curated resource of biochemical reactions.

    Published in:
    Nucleic Acids Research, 2012, p. D754
    By:
    • Alcántara, Rafael;
    • Axelsen, Kristian B.;
    • Morgat, Anne;
    • Belda, Eugeni;
    • Coudert, Elisabeth;
    • Bridge, Alan;
    • Cao, Hong;
    • de Matos, Paula;
    • Ennis, Marcus;
    • Turner, Steve;
    • Owen, Gareth;
    • Bougueleret, Lydie;
    • Xenarios, Ioannis;
    • Steinbeck, Christoph
    Publication type:
    Article

  • UniPathway: a resource for the exploration and annotation of metabolic pathways.

    Published in:
    Nucleic Acids Research, 2012, p. D761, doi. 10.1093/nar/gkr1023
    By:
    • Morgat, Anne;
    • Coissac, Eric;
    • Coudert, Elisabeth;
    • Axelsen, Kristian B.;
    • Keller, Guillaume;
    • Bairoch, Amos;
    • Bridge, Alan;
    • Bougueleret, Lydie;
    • Xenarios, Ioannis;
    • Viari, Alain
    Publication type:
    Article

  • HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D471, doi. 10.1093/nar/gkn661
    By:
    • Lima, Tania;
    • Auchincloss, Andrea H.;
    • Coudert, Elisabeth;
    • Keller, Guillaume;
    • Michoud, Karine;
    • Rivoire, Catherine;
    • Bulliard, Virginie;
    • de Castro, Edouard;
    • Lachaize, Corinne;
    • Baratin, Delphine;
    • Phan, Isabelle;
    • Bougueleret, Lydie;
    • Bairoch, Amos
    Publication type:
    Article

  • EnzChemRED, a rich enzyme chemistry relation extraction dataset.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03835-7
    By:
    • Lai, Po-Ting;
    • Coudert, Elisabeth;
    • Aimo, Lucila;
    • Axelsen, Kristian;
    • Breuza, Lionel;
    • de Castro, Edouard;
    • Feuermann, Marc;
    • Morgat, Anne;
    • Pourcel, Lucille;
    • Pedruzzi, Ivo;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Rivoire, Catherine;
    • Sveshnikova, Anastasia;
    • Wei, Chih-Hsuan;
    • Leaman, Robert;
    • Luo, Ling;
    • Lu, Zhiyong;
    • Bridge, Alan
    Publication type:
    Article

  • Rhea, the reaction knowledgebase in 2022.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. D1, p. D693, doi. 10.1093/nar/gkab1016
    By:
    • Bansal, Parit;
    • Morgat, Anne;
    • Axelsen, Kristian B;
    • Muthukrishnan, Venkatesh;
    • Coudert, Elisabeth;
    • Aimo, Lucila;
    • Hyka-Nouspikel, Nevila;
    • Gasteiger, Elisabeth;
    • Kerhornou, Arnaud;
    • Neto, Teresa Batista;
    • Pozzato, Monica;
    • Blatter, Marie-Claude;
    • Ignatchenko, Alex;
    • Redaschi, Nicole;
    • Bridge, Alan
    Publication type:
    Article

  • UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.

    Published in:
    Bioinformatics, 2020, v. 36, n. 22/23, p. 5562, doi. 10.1093/bioinformatics/btaa663
    By:
    • MacDougall, Alistair;
    • Volynkin, Vladimir;
    • Saidi, Rabie;
    • Poggioli, Diego;
    • Zellner, Hermann;
    • Hatton-Ellis, Emma;
    • Joshi, Vishal;
    • O'Donovan, Claire;
    • Orchard, Sandra;
    • Auchincloss, Andrea H;
    • Baratin, Delphine;
    • Bolleman, Jerven;
    • Coudert, Elisabeth;
    • Castro, Edouard de;
    • Hulo, Chantal;
    • Masson, Patrick;
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Arighi, Cecilia;
    • Wang, Qinghua
    Publication type:
    Article

  • UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.

    Published in:
    Bioinformatics, 2020, v. 36, n. 17, p. 4643, doi. 10.1093/bioinformatics/btaa485
    By:
    • MacDougall, Alistair;
    • Volynkin, Vladimir;
    • Saidi, Rabie;
    • Poggioli, Diego;
    • Zellner, Hermann;
    • Hatton-Ellis, Emma;
    • Joshi, Vishal;
    • O'Donovan, Claire;
    • Orchard, Sandra;
    • Auchincloss, Andrea H;
    • Baratin, Delphine;
    • Bolleman, Jerven;
    • Coudert, Elisabeth;
    • Castro, Edouard de;
    • Hulo, Chantal;
    • Masson, Patrick;
    • Pedruzzi, Ivo;
    • Rivoire, Catherine;
    • Arighi, Cecilia;
    • Wang, Qinghua
    Publication type:
    Article

  • Enzyme annotation in UniProtKB using Rhea.

    Published in:
    Bioinformatics, 2020, v. 36, n. 6, p. 1896, doi. 10.1093/bioinformatics/btz817
    By:
    • Morgat, Anne;
    • Lombardot, Thierry;
    • Coudert, Elisabeth;
    • Axelsen, Kristian;
    • Neto, Teresa Batista;
    • Gehant, Sebastien;
    • Bansal, Parit;
    • Bolleman, Jerven;
    • Gasteiger, Elisabeth;
    • Castro, Edouard de;
    • Baratin, Delphine;
    • Pozzato, Monica;
    • Xenarios, Ioannis;
    • Poux, Sylvain;
    • Redaschi, Nicole;
    • Bridge, Alan;
    • Consortium, The UniProt
    Publication type:
    Article