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Development of a molecular methodology to quantify Staphylococcus epidermidis in surgical wash-out samples from prosthetic joint replacement surgery.
Published in:
European Journal of Orthopaedic Surgery & Traumatology, 2024, v. 34, p. 1, doi. 10.1007/s00590-007-0221-5
By:
- Byrne, Fergus J.;
- Waters, Sinéad M.;
- Waters, Peadar S.;
- Curtin, William;
- Kerin, Michael
Publication type:
Article
Development of a molecular methodology to quantify Staphylococcus epidermidis in surgical wash-out samples from prosthetic joint replacement surgery.
Published in:
European Journal of Orthopaedic Surgery & Traumatology, 2024, v. 34, p. 1, doi. 10.1007/s00590-007-0221-5
By:
- Byrne, Fergus J.;
- Waters, Sinéad M.;
- Waters, Peadar S.;
- Curtin, William;
- Kerin, Michael
Publication type:
Article
RNA messaggero come biomarker dell’infezione da Virus Respiratorio Sinciziale Bovino nel sangue intero di vitelli da latte.
Published in:
Summa, Animali da Reddito, 2021, v. 16, n. 7, p. 39
By:
- Johnston, Dayle;
- Earley, Bernadette;
- McCabe, Matthew S.;
- Kim, JaeWoo;
- Taylor, Jeremy F.;
- Lemon, Ken;
- Duffy, Catherine;
- McMenamy, Michael;
- Cosby, S. Louise;
- Waters, Sinead M.
Publication type:
Article
Health-associated changes of the fecal microbiota in dairy heifer calves during the pre-weaning period.
Published in:
Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1359611
By:
- Scully, Sabine;
- Earley, Bernadette;
- Smith, Paul E.;
- McAloon, Catherine;
- Waters, Sinéad M.
Publication type:
Article
The Structural and Functional Capacity of Ruminal and Cecal Microbiota in Growing Cattle Was Unaffected by Dietary Supplementation of Linseed Oil and Nitrate.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00937
By:
- Popova, Milka;
- McGovern, Emily;
- McCabe, Matthew S.;
- Martin, Cécile;
- Doreau, Michel;
- Arbre, Marie;
- Meale, Sarah J.;
- Morgavi, Diego P.;
- Waters, Sinéad M.
Publication type:
Article
Elucidation of the Host Bronchial Lymph Node miRNA Transcriptome Response to Bovine Respiratory Syncytial Virus.
Published in:
Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.633125
By:
- Johnston, Dayle;
- Earley, Bernadette;
- McCabe, Matthew S.;
- Kim, Jaewoo;
- Taylor, Jeremy F.;
- Lemon, Ken;
- McMenamy, Michael;
- Duffy, Catherine;
- Cosby, S. Louise;
- Waters, Sinéad M.
Publication type:
Article
Genomic insights into the physiology of Quinella, an iconic uncultured rumen bacterium.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34013-1
By:
- Kumar, Sandeep;
- Altermann, Eric;
- Leahy, Sinead C.;
- Jauregui, Ruy;
- Jonker, Arjan;
- Henderson, Gemma;
- Kittelmann, Sandra;
- Attwood, Graeme T.;
- Kamke, Janine;
- Waters, Sinéad M.;
- Patchett, Mark L.;
- Janssen, Peter H.
Publication type:
Article
Correction to: Residual feed intake phenotype and gender affect the expression of key genes of the lipogenesis pathway in subcutaneous adipose tissue of beef cattle.
Published in:
2018
By:
- McKenna, Clare;
- Porter, Richard K.;
- Keogh, Kate A.;
- Waters, Sinead M.;
- McGee, Mark;
- Kenny, David A.
Publication type:
Correction Notice
ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-020-07268-5
By:
- Johnston, Dayle;
- Kim, JaeWoo;
- Taylor, Jeremy F.;
- Earley, Bernadette;
- McCabe, Matthew S.;
- Lemon, Ken;
- Duffy, Catherine;
- McMenamy, Michael;
- Cosby, S. Louise;
- Waters, Sinéad M.
Publication type:
Article
Ecosystem management using livestock: embracing diversity and respecting ecological principles.
Published in:
Animal Frontiers, 2023, v. 13, n. 2, p. 28, doi. 10.1093/af/vfac094
By:
- Thompson, Logan;
- Rowntree, Jason;
- Windisch, Wilhelm;
- Waters, Sinéad M;
- Shalloo, Laurence;
- Manzano, Pablo
Publication type:
Article
Effect of breed and diet on the M. longissimus thoracis et lumborum transcriptome of steers divergent for residual feed intake.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-35661-z
By:
- Keogh, Kate;
- McKenna, Clare;
- Waters, Sinead M.;
- Porter, Richard K.;
- Fitzsimons, Claire;
- McGee, Mark;
- Kenny, David A.
Publication type:
Article
Breed and ruminal fraction effects on bacterial and archaeal community composition in sheep.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-28909-1
By:
- McLoughlin, Steven;
- Spillane, Charles;
- Campion, Francis P.;
- Claffey, Noel;
- Sosa, Chrystian C.;
- McNicholas, Yvonne;
- Smith, Paul E.;
- Diskin, Michael G.;
- Waters, Sinéad M.
Publication type:
Article
Differences in the Composition of the Rumen Microbiota of Finishing Beef Cattle Divergently Ranked for Residual Methane Emissions.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.855565
By:
- Smith, Paul E.;
- Kelly, Alan K.;
- Kenny, David A.;
- Waters, Sinéad M.
Publication type:
Article
Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods.
Published in:
PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106491
By:
- Snelling, Timothy J.;
- Genç, Buğra;
- McKain, Nest;
- Watson, Mick;
- Waters, Sinéad M.;
- Creevey, Christopher J.;
- Wallace, R. John
Publication type:
Article
Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of hepatic tissue in cattle.
Published in:
BMC Genomics, 2016, v. 17, p. 244, doi. 10.1186/s12864-016-2578-5
By:
- Keogh, Kate;
- Kenny, David A.;
- Cormican, Paul;
- Kelly, Alan K.;
- Waters, Sinead M.
Publication type:
Article
Editorial: Rumen microbiome: interacting with host genetics, dietary nutrients metabolism, animal production, and environment.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1267149
By:
- Qingbiao Xu;
- Ungerfeld, Emilio M.;
- Morgavi, Diego P.;
- Waters, Sinead M.;
- Jinxin Liu;
- Wenjuan Du;
- Shengguo Zhao
Publication type:
Article
Genome-Wide microRNA Binding Site Variation between Extinct Wild Aurochs and Modern Cattle Identifies Candidate microRNA-Regulated Domestication Genes.
Published in:
Frontiers in Genetics, 2017, v. 8, p. 1, doi. 10.3389/fgene.2017.00003
By:
- Braud, Martin;
- Magee, David A.;
- Park, Stephen D. E.;
- Sonstegard, Tad S.;
- Waters, Sinead M.;
- MacHugh, David E.;
- Spillane, Charles
Publication type:
Article
Proteomic profiling of bovine M. longissimus lumborum from Crossbred Aberdeen Angus and Belgian Blue sired steers varying in genetic merit for carcass weight.
Published in:
Journal of Animal Science, 2013, v. 91, n. 2, p. 654, doi. 10.2527/jas.2012-5850
By:
- Keady, Sarah M.;
- Kenny, David A.;
- Ohlendieck, Kay;
- Doyle, Sean;
- Keane, M. G.;
- Waters, Sinéad M.
Publication type:
Article
Sward type alters the relative abundance of members of the rumen microbial ecosystem in dairy cows.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66028-3
By:
- Smith, Paul E.;
- Enriquez-Hidalgo, Daniel;
- Hennessy, Deirdre;
- McCabe, Matthew S.;
- Kenny, David A.;
- Kelly, Alan K.;
- Waters, Sinéad M.
Publication type:
Article
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-59412-6
By:
- Mullins, Yvonne;
- Keogh, Kate;
- Kenny, David A.;
- Kelly, Alan;
- O' Boyle, Padraig;
- Waters, Sinéad M.
Publication type:
Article
Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-51094-z
By:
- Johnston, Dayle;
- Earley, Bernadette;
- McCabe, Matthew S.;
- Lemon, Ken;
- Duffy, Catherine;
- McMenamy, Michael;
- Cosby, S. Louise;
- Kim, JaeWoo;
- Blackshields, Gordon;
- Taylor, Jeremy F.;
- Waters, Sinead M.
Publication type:
Article
Association of bovine leptin polymorphisms with energy output and energy storage traits in progeny tested Holstein-Friesian dairy cattle sires.
Published in:
BMC Genetics, 2010, v. 11, p. 73, doi. 10.1186/1471-2156-11-73
By:
- Giblin, Linda;
- Butler, Stephen T.;
- Kearney, Breda M.;
- Waters, Sinead M.;
- Callanan, Michael J.;
- Berry, Donagh P.
Publication type:
Article
Assessment of Rapid MinION Nanopore DNA Virus Meta-Genomics Using Calves Experimentally Infected with Bovine Herpes Virus-1.
Published in:
Viruses (1999-4915), 2022, v. 14, n. 9, p. 1859, doi. 10.3390/v14091859
By:
- Esnault, Gaelle;
- Earley, Bernadette;
- Cormican, Paul;
- Waters, Sinead M.;
- Lemon, Ken;
- Cosby, S. Louise;
- Lagan, Paula;
- Barry, Thomas;
- Reddington, Kate;
- McCabe, Matthew S.
Publication type:
Article
Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4681-2
By:
- English, Anne-Marie;
- Waters, Sineád M.;
- Cormican, Paul;
- Byrne, Colin J.;
- Fair, Seán;
- Kenny, David A.
Publication type:
Article
Effect of short term diet restriction on gene expression in the bovine hypothalamus using next generation RNA sequencing technology.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4265-6
By:
- Matthews, Daragh;
- Diskin, Michael G.;
- Kenny, David A.;
- Creevey, Christopher J.;
- Keogh, Kate;
- Waters, Sinead M.
Publication type:
Article
Messenger RNA biomarkers of Bovine Respiratory Syncytial Virus infection in the whole blood of dairy calves.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88878-1
By:
- Johnston, Dayle;
- Earley, Bernadette;
- McCabe, Matthew S.;
- Kim, JaeWoo;
- Taylor, Jeremy F.;
- Lemon, Ken;
- Duffy, Catherine;
- McMenamy, Michael;
- Cosby, S. Louise;
- Waters, Sinead M.
Publication type:
Article
An examination of skeletal muscle and hepatic tissue transcriptomes from beef cattle divergent for residual feed intake.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87842-3
By:
- McKenna, Clare;
- Keogh, Kate;
- Porter, Richard K.;
- Waters, Sinead M.;
- Cormican, Paul;
- Kenny, David A.
Publication type:
Article
Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-77907-0
By:
- Lyons, Tamsin;
- Jahns, Hanne;
- Brady, Joseph;
- O'Hara, Eóin;
- Waters, Sinéad M.;
- Kenny, David;
- Doyle, Evelyn;
- Meade, Kieran G.
Publication type:
Article
Effects of dietary n-3-PUFA supplementation, post-insemination plane of nutrition and pregnancy status on the endometrial transcriptome of beef heifers.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77604-y
By:
- Surlis, Carla;
- Cormican, Paul;
- Waters, Sinead M.;
- Lonergan, Patrick;
- Keogh, Kate;
- Doyle, David N.;
- Kenny, David A.
Publication type:
Article
Bovine hepatic miRNAome profiling and differential miRNA expression analyses between beef steers with divergent feed efficiency phenotypes.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73885-5
By:
- Mukiibi, Robert;
- Johnston, Dayle;
- Vinsky, Michael;
- Fitzsimmons, Carolyn;
- Stothard, Paul;
- Waters, Sinéad M.;
- Li, Changxi
Publication type:
Article
Genome wide association study of passive immunity and disease traits in beef-suckler and dairy calves on Irish farms.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-75870-4
By:
- Johnston, Dayle;
- Mukiibi, Robert;
- Waters, Sinéad M.;
- McGee, Mark;
- Surlis, Carla;
- McClure, Jennifer C.;
- McClure, Matthew C.;
- Todd, Cynthia G.;
- Earley, Bernadette
Publication type:
Article
Investigation into the effect of divergent feed efficiency phenotype on the bovine rumen microbiota across diet and breed.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71458-0
By:
- McGovern, Emily;
- McGee, Mark;
- Byrne, Colin J.;
- Kenny, David A.;
- Kelly, Alan K.;
- Waters, Sinéad M.
Publication type:
Article
Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02161
By:
- Huws, Sharon A.;
- Creevey, Christopher J.;
- Oyama, Linda B.;
- Mizrahi, Itzhak;
- Denman, Stuart E.;
- Popova, Milka;
- Muñoz-Tamayo, Rafael;
- Forano, Evelyne;
- Waters, Sinead M.;
- Hess, Matthias;
- Tapio, Ilma;
- Smidt, Hauke;
- Krizsan, Sophie J.;
- Yáñez-Ruiz, David R.;
- Belanche, Alejandro;
- Guan, Leluo;
- Gruninger, Robert J.;
- McAllister, Tim A.;
- Newbold, C. Jamie;
- Roehe, Rainer
Publication type:
Article
16S rRNA Sequencing Reveals Relationship Between Potent Cellulolytic Genera and Feed Efficiency in the Rumen of Bulls.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01842
By:
- McGovern, Emily;
- Kenny, David A.;
- McCabe, Matthew S.;
- Fitzsimons, Claire;
- McGee, Mark;
- Kelly, Alan K.;
- Waters, Sinéad M.
Publication type:
Article
Evaluating Established Methods for Rumen 16S rRNA Amplicon Sequencing With Mock Microbial Populations.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01365
By:
- McGovern, Emily;
- Waters, Sinéad M.;
- Blackshields, Gordon;
- McCabe, Matthew S.
Publication type:
Article
Effect of Dietary Restriction and Subsequent Re-Alimentation on the Transcriptional Profile of Bovine Skeletal Muscle.
Published in:
PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149373
By:
- Keogh, Kate;
- Kenny, David A.;
- Cormican, Paul;
- McCabe, Matthew S.;
- Kelly, Alan K.;
- Waters, Sinead M.
Publication type:
Article
Synthetic Sequencing Standards: A Guide to Database Choice for Rumen Microbiota Amplicon Sequencing Analysis.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.606825
By:
- Smith, Paul E.;
- Waters, Sinead M.;
- Gómez Expósito, Ruth;
- Smidt, Hauke;
- Carberry, Ciara A.;
- McCabe, Matthew S.
Publication type:
Article
Rumen Microbiome Composition Is Altered in Sheep Divergent in Feed Efficiency.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.01981
By:
- McLoughlin, Steven;
- Spillane, Charles;
- Claffey, Noel;
- Smith, Paul E.;
- O'Rourke, Tommy;
- Diskin, Michael G.;
- Waters, Sinéad M.
Publication type:
Article
The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5906-8
By:
- Higgins, Marc G.;
- Kenny, David A.;
- Fitzsimons, Claire;
- Blackshields, Gordon;
- Coyle, Séan;
- McKenna, Clare;
- McGee, Mark;
- Morris, Derek W.;
- Waters, Sinéad M.
Publication type:
Article
Effect of divergence in residual methane emissions on feed intake and efficiency, growth and carcass performance, and indices of rumen fermentation and methane emissions in finishing beef cattle.
Published in:
Journal of Animal Science, 2021, v. 99, n. 11, p. 1, doi. 10.1093/jas/skab275
By:
- Smith, Paul E;
- Waters, Sinead M;
- Kenny, David A;
- Kirwan, Stuart F;
- Conroy, Stephen;
- Kelly, Alan K
Publication type:
Article
The potential for mitigation of methane emissions in ruminants through the application of metagenomics, metabolomics, and other -OMICS technologies.
Published in:
Journal of Animal Science, 2021, v. 99, n. 10, p. 1, doi. 10.1093/jas/skab193
By:
- Asselstine, Victoria;
- Lam, Stephanie;
- Miglior, Filippo;
- Brito, Luiz F;
- Sweett, Hannah;
- Guan, Leluo;
- Waters, Sinead M;
- Plastow, Graham;
- Cánovas, Angela
Publication type:
Article
Liver transcriptome profiling of beef steers with divergent growth rate, feed intake, or metabolic body weight phenotypes.
Published in:
Journal of Animal Science, 2019, v. 97, n. 11, p. 4386, doi. 10.1093/jas/skz315
By:
- Mukiibi, Robert;
- Vinsky, Michael;
- Keogh, Kate;
- Fitzsimmons, Carolyn;
- Stothard, Paul;
- Waters, Sinéad M;
- Li, Changxi
Publication type:
Article
Gene co-expression networks contributing to the expression of compensatory growth in metabolically active tissues in cattle.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-42608-w
By:
- Keogh, Kate;
- Kenny, David A.;
- Waters, Sinead M.
Publication type:
Article
Effect of a butyrate-fortified milk replacer on gastrointestinal microbiota and products of fermentation in artificially reared dairy calves at weaning.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33122-6
By:
- O’Hara, Eóin;
- Kelly, Alan;
- McCabe, Matthew S.;
- Kenny, David A.;
- Guan, Le Luo;
- Waters, Sinéad M.
Publication type:
Article
GWAS and eQTL analysis identifies a SNP associated with both residual feed intake and GFRA2 expression in beef cattle.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-32374-6
By:
- Higgins, Marc G.;
- Fitzsimons, Claire;
- McClure, Matthew C.;
- McKenna, Clare;
- Conroy, Stephen;
- Kenny, David A.;
- McGee, Mark;
- Waters, Sinéad M.;
- Morris, Derek W.
Publication type:
Article
Examination of the molecular control of ruminal epithelial function in response to dietary restriction and subsequent compensatory growth in cattle.
Published in:
Journal of Animal Science & Biotechnology, 2016, v. 7, p. 1, doi. 10.1186/s40104-016-0114-8
By:
- O'Shea, Emma;
- Waters, Sinéad M.;
- Keogh, Kate;
- Kelly, Alan K.;
- Kenny, David A.
Publication type:
Article
Effect of genotype on duodenal expression of nutrient transporter genes in dairy cows.
Published in:
Journal of Animal Science & Biotechnology, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2049-1891-4-49
By:
- Waters, Sinéad M.;
- Keogh, Kate;
- Buckley, Frank;
- Kenny, David A.
Publication type:
Article
Long-term effects of prior diets, dietary transition and pregnancy on adipose gene expression in dairy heifers.
Published in:
PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0218723
By:
- Wærp, Hilde K. L.;
- Waters, Sinéad M.;
- McCabe, Matthew S.;
- Cormican, Paul;
- Salte, Ragnar
Publication type:
Article
RNA-seq analysis of bovine adipose tissue in heifers fed diets differing in energy and protein content.
Published in:
PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0201284
By:
- Wærp, Hilde K. L.;
- Waters, Sinéad M.;
- McCabe, Matthew S.;
- Cormican, Paul;
- Salte, Ragnar
Publication type:
Article
Global gene expression in endometrium of high and low fertility heifers during the mid-luteal phase of the estrous cycle.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-234
By:
- Killeen, Aideen P.;
- Morris, Dermot G.;
- Kenny, David A.;
- Mullen, Michael P.;
- Diskin, Michael G.;
- Waters, Sinéad M.
Publication type:
Article

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