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- Title
CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization.
- Authors
Frias, Silvia; Bryan, Kenneth; Brinkman, Fiona S. L.; Lynn, David J.
- Abstract
CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb.com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources. Database tool URL: http://www.innatedb.com/CerebralWeb
- Subjects
PLUG-ins (Computer programs); GENETIC software
- Publication
Database: The Journal of Biological Databases & Curation, 2015, Vol 2015, p1
- ISSN
1758-0463
- Publication type
Product Review
- DOI
10.1093/database/bav041