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Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36517-w
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- Article
LSTrAP-Crowd: prediction of novel components of bacterial ribosomes with crowd-sourced analysis of RNA sequencing data.
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- BMC Biology, 2020, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12915-020-00846-9
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- Article
CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W133, doi. 10.1093/nar/gky336
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- Article
PhytoNet: comparative co-expression network analyses across phytoplankton and land plants.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W76, doi. 10.1093/nar/gky298
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- Publication type:
- Article
GeneCAT—novel webtools that combine BLAST and co-expression analyses.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W320, doi. 10.1093/nar/gkn292
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- Publication type:
- Article
New molecular components that regulate the transcriptional hub in root hairs: coupling environmental signals with endogenous hormones to coordinate growth.
- Published in:
- Journal of Experimental Botany, 2024, v. 75, n. 14, p. 4171, doi. 10.1093/jxb/erad419
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- Article
Structural landscape of the complete genomes of dengue virus serotypes and other viral hemorrhagic fevers.
- Published in:
- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07638-7
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- Article
LSTrAP-Kingdom: an automated pipeline to generate annotated gene expression atlases for kingdoms of life.
- Published in:
- Bioinformatics, 2021, v. 37, n. 18, p. 3053, doi. 10.1093/bioinformatics/btab168
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- Article
The Arabidopsis electron‐transfer flavoprotein:ubiquinone oxidoreductase is required during normal seed development and germination.
- Published in:
- Plant Journal, 2022, v. 109, n. 1, p. 196, doi. 10.1111/tpj.15566
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- Article
AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome.
- Published in:
- Plant Journal, 2018, v. 96, n. 2, p. 404, doi. 10.1111/tpj.14040
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- Publication type:
- Article
Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.
- Published in:
- Plant Journal, 2017, v. 90, n. 3, p. 447, doi. 10.1111/tpj.13502
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- Article
Using Gene Expression to Study Specialized Metabolism—A Practical Guide.
- Published in:
- Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.625035
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- Article
Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08703-2
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- Article
Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots.
- Published in:
- Plant Cell, 2020, v. 32, n. 4, p. 853, doi. 10.1105/tpc.19.00780
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- Article
PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species.
- Published in:
- Plant Cell, 2011, v. 23, n. 3, p. 895, doi. 10.1105/tpc.111.083667
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- Publication type:
- Article
Comparative transcriptome database for Camellia sinensis reveals genes related to the cold sensitivity and albino mechanism of 'Anji Baicha'.
- Published in:
- Physiologia Plantarum, 2024, v. 176, n. 4, p. 1, doi. 10.1111/ppl.14474
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- Article
LSTrAP‐denovo: Automated Generation of Transcriptome Atlases for Eukaryotic Species Without Genomes.
- Published in:
- Physiologia Plantarum, 2024, v. 176, n. 4, p. 1, doi. 10.1111/ppl.14407
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- Article
Feature importance network reveals novel functional relationships between biological features in Arabidopsis thaliana.
- Published in:
- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.944992
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- Article
PEO: Plant Expression Omnibus – a comparative transcriptomic database for 103 Archaeplastida.
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- Plant Journal, 2024, v. 117, n. 5, p. 1592, doi. 10.1111/tpj.16566
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- Publication type:
- Article
Volatile-Based Diagnosis for Pathogenic Wood-Rot Fungus Fulvifomes siamensis by Electronic Nose (E-Nose) and Solid-Phase Microextraction/Gas Chromatography/Mass Spectrometry.
- Published in:
- Sensors (14248220), 2023, v. 23, n. 9, p. 4538, doi. 10.3390/s23094538
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- Article
Diurnal.plant.tools: Comparative Transcriptomic and Co-expression Analyses of Diurnal Gene Expression of the Archaeplastida Kingdom.
- Published in:
- Plant & Cell Physiology, 2020, v. 61, n. 1, p. 212, doi. 10.1093/pcp/pcz176
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- Article
Transcriptomic and metabolomic characterization of antibacterial activity of Melastoma dodecandrum.
- Published in:
- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1205725
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- Publication type:
- Article
Removing auto-activators from yeast-two-hybrid assays by conditional negative selection.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-84608-9
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- Article
Gene expression analysis of Cyanophora paradoxa reveals conserved abiotic stress responses between basal algae and flowering plants.
- Published in:
- New Phytologist, 2020, v. 225, n. 4, p. 1562, doi. 10.1111/nph.16257
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- Article
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats.
- Published in:
- Plant, Cell & Environment, 2009, v. 32, n. 12, p. 1633, doi. 10.1111/j.1365-3040.2009.02040.x
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- Publication type:
- Article
Malaria.tools—comparative genomic and transcriptomic database for Plasmodium species.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D768, doi. 10.1093/nar/gkz662
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- Publication type:
- Article
Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod.
- Published in:
- Plant Physiology, 2019, v. 180, n. 1, p. 185, doi. 10.1104/pp.18.01346
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- Publication type:
- Article
FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants.
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- Plant Physiology, 2016, v. 170, n. 3, p. 1878, doi. 10.1104/pp.15.01281
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- Publication type:
- Article
Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
- Published in:
- Plant Physiology, 2015, v. 169, n. 2, p. 1028, doi. 10.1104/pp.15.00962
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- Article
Toward the Storage Metabolome: Profiling the Barley Vacuole.
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- Plant Physiology, 2011, v. 157, n. 3, p. 1469, doi. 10.1104/pp.111.185710
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- Article
Assembly of an Interactive Correlation Network for the Arabidopsis Genome Using a Novel Heuristic Clustering Algorithm.
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- Plant Physiology, 2010, v. 152, n. 1, p. 29, doi. 10.1104/pp.109.145318
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- Publication type:
- Article
LSTrAP: efficiently combining RNA sequencing data into co-expression networks.
- Published in:
- 2017
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- Publication type:
- Product Review
Locally Isolated Trichoderma harzianum Species Have Broad Spectrum Biocontrol Activities against the Wood Rot Fungal Species through Both Volatile Inhibition and Mycoparasitism.
- Published in:
- Journal of Fungi, 2023, v. 9, n. 6, p. 675, doi. 10.3390/jof9060675
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- Publication type:
- Article
A Metagenomic Survey of Wood Decay Fungi in the Urban Trees of Singapore.
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- Journal of Fungi, 2023, v. 9, n. 4, p. 460, doi. 10.3390/jof9040460
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- Publication type:
- Article
Ensemble gene function prediction database reveals genes important for complex I formation in <italic>Arabidopsis thaliana</italic>.
- Published in:
- New Phytologist, 2018, v. 217, n. 4, p. 1521, doi. 10.1111/nph.14921
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- Publication type:
- Article
Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon.
- Published in:
- New Phytologist, 2017, v. 215, n. 3, p. 1009, doi. 10.1111/nph.14635
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- Publication type:
- Article
LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks.
- Published in:
- Genes, 2020, v. 11, n. 4, p. 1, doi. 10.3390/genes11040428
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- Publication type:
- Article
A method for mining condition-specific co-expressed genes in Camellia sinensis based on k-means clustering.
- Published in:
- BMC Plant Biology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12870-024-05086-5
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- Publication type:
- Article
Elucidating gene function and function evolution through comparison of co-expression networks of plants.
- Published in:
- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00394
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- Publication type:
- Article
Elucidating gene function and function evolution through comparison of co-expression networks of plants.
- Published in:
- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00394
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- Publication type:
- Article
Analysis of an improved Cyanophora paradoxa genome assembly.
- Published in:
- DNA Research, 2019, v. 26, n. 4, p. 287, doi. 10.1093/dnares/dsz009
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- Publication type:
- Article
Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana.
- Published in:
- PLoS Genetics, 2016, v. 12, n. 10, p. 1, doi. 10.1371/journal.pgen.1006363
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- Publication type:
- Article