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- Title
ASAR: visual analysis of metagenomes in R.
- Authors
Orakov, Askarbek N; Sakenova, Nazgul K; Sorokin, Anatoly; Goryanin, Igor I
- Abstract
Motivation: Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently, such analyses are run separately, which complicates interpretation of results. Here we present the ASAR interactive tool for simultaneous analysis of metagenomic data in three dimensions: taxonomy, function, metagenome. Results: An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation results is available.
- Subjects
TAXONOMY; VISUALIZATION; ENZYME activation; PROGRAMMING languages; ANNOTATIONS
- Publication
Bioinformatics, 2018, Vol 34, Issue 8, p1404
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btx775