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Structure-based learning to predict and model protein--DNA interactions and transcription-factor co-operativity in cis-regulatory elements.
- Published in:
- NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae068
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- Article
ArchDB 2014: structural classification of loops in proteins.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D315, doi. 10.1093/nar/gkt1189
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- Article
Author Correction: A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy.
- Published in:
- 2020
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- Correction Notice
A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy.
- Published in:
- Nature Biotechnology, 2020, v. 38, n. 4, p. 426, doi. 10.1038/s41587-019-0403-9
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- Article
Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen.
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- PLoS Biology, 2019, v. 17, n. 2, p. 1, doi. 10.1371/journal.pbio.3000164
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- Article
SBILib: a handle for protein modeling and engineering.
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- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad613
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- Article
Intramolecular trimerization, a novel strategy for making multispecific antibodies with controlled orientation of the antigen binding domains.
- Published in:
- Scientific Reports, 2016, p. 28643, doi. 10.1038/srep28643
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- Article
In Vivo Tumor Targeting and Imaging with Engineered Trivalent Antibody Fragments Containing Collagen- Derived Sequences.
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- PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005381
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- Article
The role of residue stability in transient protein-protein interactions involved in enzymatic phosphate hydrolysis. A computational study.
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- Proteins, 2006, v. 63, n. 1, p. 65, doi. 10.1002/prot.20791
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- Article
Bispecific light T-cell engagers for gene-based immunotherapy of epidermal growth factor receptor (EGFR)-positive malignancies.
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- Cancer Immunology, Immunotherapy, 2018, v. 67, n. 8, p. 1251, doi. 10.1007/s00262-018-2181-5
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- Article
Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.
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- Molecular Informatics, 2012, v. 31, n. 5, p. 342, doi. 10.1002/minf.201200005
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- Article
Alternative interaction sites in the influenza A virus nucleoprotein mediate viral escape from the importin‐α7 mediated nuclear import pathway.
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- FEBS Journal, 2019, v. 286, n. 17, p. 3374, doi. 10.1111/febs.14868
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- Article
RosettaSurf—A surface-centric computational design approach.
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- PLoS Computational Biology, 2022, v. 18, n. 3, p. 1, doi. 10.1371/journal.pcbi.1009178
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- Article
Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications.
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- Bio-Algorithms & Med-Systems, 2014, v. 10, n. 4, p. 195, doi. 10.1515/bams-2014-0016
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- Publication type:
- Article
rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2796-3
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- Article
Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions.
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- PLoS Computational Biology, 2007, v. 3, n. 9, p. 1761, doi. 10.1371/journal.pcbi.0030178
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- Article
Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.
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- Nature Communications, 2016, v. 7, n. 10, p. 13205, doi. 10.1038/ncomms13205
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- Article
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.
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- Nature Communications, 2016, v. 7, n. 8, p. 12460, doi. 10.1038/ncomms12460
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- Article
Prediction of a new class of RNA recognition motif.
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- Journal of Molecular Modeling, 2011, v. 17, n. 8, p. 1863, doi. 10.1007/s00894-010-0888-0
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- Article
InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.
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- Biochemical Society Transactions, 2016, v. 44, n. 3, p. 917, doi. 10.1042/BST20150001
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- Article
Amyloid-β Peptide Nitrotyrosination Stabilizes Oligomers and Enhances NMDAR-Mediated Toxicity.
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- Journal of Neuroscience, 2016, v. 36, n. 46, p. 11693, doi. 10.1523/JNEUROSCI.1081-16.2016
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- Article
On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.
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- Bioinformatics, 2018, v. 34, n. 4, p. 592, doi. 10.1093/bioinformatics/btx616
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- Article
Frag’r’Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design.
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- Bioinformatics, 2014, v. 30, n. 13, p. 1935, doi. 10.1093/bioinformatics/btu129
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- Article
iLoops: a protein–protein interaction prediction server based on structural features.
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- Bioinformatics, 2013, v. 29, n. 18, p. 2360, doi. 10.1093/bioinformatics/btt401
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- Article
Using collections of structural models to predict changes of binding affinity caused by mutations in protein–protein interactions.
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- Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 10, p. 2112, doi. 10.1002/pro.3930
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- Article
SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-020-03770-5
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- Article
Rosetta FunFolDes – A general framework for the computational design of functional proteins.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pcbi.1006623
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- Article