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Low X/Y divergence in four pairs of papaya sex-linked genes.
Published in:
Plant Journal, 2008, v. 53, n. 1, p. 124, doi. 10.1111/j.1365-313X.2007.03329.x
By:
- Qingyi Yu;
- Shaobin Hou;
- Feltus, F. Alex;
- Jones, Meghan R.;
- Murray, Jan E.;
- Veatch, Olivia;
- Lemke, Cornelia;
- Saw, Jimmy H.;
- Moore, Richard C.;
- Thimmapuram, Jyothi;
- Lei Liu;
- Moore, Paul H.;
- Alam, Maqsudul;
- Jiming Jiang;
- Paterson, Andrew H.;
- Ray Ming
Publication type:
Article
'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1353, doi. 10.1038/ismej.2014.6
By:
- Guy, Lionel;
- Spang, Anja;
- Saw, Jimmy H;
- Ettema, Thijs J G
Publication type:
Article
Spotting disease disrupts the microbiome of infected purple sea urchins, Strongylocentrotus purpuratus.
Published in:
BMC Microbiology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12866-023-03161-9
By:
- Shaw, Chloe G.;
- Pavloudi, Christina;
- Crow, Ryley S.;
- Saw, Jimmy H.;
- Smith, L. Courtney
Publication type:
Article
Spotting disease disrupts the microbiome of infected purple sea urchins, Strongylocentrotus purpuratus.
Published in:
BMC Microbiology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12866-023-03161-9
By:
- Shaw, Chloe G.;
- Pavloudi, Christina;
- Crow, Ryley S.;
- Saw, Jimmy H.;
- Smith, L. Courtney
Publication type:
Article
Asgard archaea are the closest prokaryotic relatives of eukaryotes.
Published in:
PLoS Genetics, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pgen.1007080
By:
- Spang, Anja;
- Eme, Laura;
- Saw, Jimmy H.;
- Caceres, Eva F.;
- Zaremba-Niedzwiedzka, Katarzyna;
- Lombard, Jonathan;
- Guy, Lionel;
- Ettema, Thijs J. G.
Publication type:
Article
Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.934708
By:
- Prescott, Rebecca D.;
- Zamkovaya, Tatyana;
- Donachie, Stuart P.;
- Northup, Diana E.;
- Medley, Joseph J.;
- Monsalve, Natalia;
- Saw, Jimmy H.;
- Decho, Alan W.;
- Chain, Patrick S. G.;
- Boston, Penelope J.
Publication type:
Article
Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.934708
By:
- Prescott, Rebecca D.;
- Zamkovaya, Tatyana;
- Donachie, Stuart P.;
- Northup, Diana E.;
- Medley, Joseph J.;
- Monsalve, Natalia;
- Saw, Jimmy H.;
- Decho, Alan W.;
- Chain, Patrick S. G.;
- Boston, Penelope J.
Publication type:
Article
Cultivation and Complete Genome Sequencing of <i>Gloeobacter kilaueensis</i> sp. nov., from a Lava Cave in Kīlauea Caldera, Hawai'i.
Published in:
PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076376
By:
- Saw, Jimmy H. W.;
- Schatz, Michael;
- Brown, Mark V.;
- Kunkel, Dennis D.;
- Foster, Jamie S.;
- Shick, Harry;
- Christensen, Stephanie;
- Hou, Shaobin;
- Wan, Xuehua;
- Donachie, Stuart P.
Publication type:
Article
Assembling the Marine Metagenome, One Cell at a Time.
Published in:
PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005299
By:
- Woyke, Tanja;
- Xie, Gary;
- Copeland, Alex;
- González, José M.;
- Han, Cliff;
- Kiss, Hajnalka;
- Saw, Jimmy H.;
- Senin, Pavel;
- Chi Yang;
- Chatterji, Sourav;
- Jan-Fang Cheng;
- Eisen, Jonathan A.;
- Sieracki, Michael E.;
- Stepanauskas, Ramunas
Publication type:
Article
Metabolic versatility of Caldarchaeales from geothermal features of Hawai’i and Chile as revealed by five metagenome-assembled genomes.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1216591
By:
- Balbay, Manolya Gul;
- Shlafstein, Maximillian D.;
- Cockell, Charles;
- Cady, Sherry L.;
- Prescott, Rebecca D.;
- Lim, Darlene S. S.;
- Chain, Patrick S. G.;
- Donachie, Stuart P.;
- Decho, Alan W.;
- Saw, Jimmy H.
Publication type:
Article
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).
Published in:
Nature, 2008, v. 452, n. 7190, p. 991, doi. 10.1038/nature06856
By:
- Ming, Ray;
- Hou, Shaobin;
- Yun Feng;
- Qingyi Yu;
- Dionne-Laporte, Alexandre;
- Saw, Jimmy H.;
- Senin, Pavel;
- Wei Wang;
- Ly, Benjamin V.;
- Lewis, Kanako L. T.;
- Salzberg, Steven L.;
- Lu Feng;
- Jones, Meghan R.;
- Skelton, Rachel L.;
- Murray, Jan E.;
- Chen, Cuixia;
- Wubin Qian;
- Junguo Shen;
- Du, Peng;
- Eustice, Moriah
Publication type:
Article
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.
Published in:
Nature, 2007, v. 450, n. 7171, p. 879, doi. 10.1038/nature06411
By:
- Dunfield, Peter F.;
- Yuryev, Anton;
- Senin, Pavel;
- Smirnova, Angela V.;
- Stott, Matthew B.;
- Shaobin Hou;
- Binh Ly;
- Saw, Jimmy H.;
- Zhemin Zhou;
- Yan Ren;
- Jianmei Wang;
- Mountain, Bruce W.;
- Crowe, Michelle A.;
- Weatherby, Tina M.;
- Bodelier, Paul L. E.;
- Liesack, Werner;
- Lu Feng;
- Lei Wang;
- Alam, Maqsudul
Publication type:
Article
Streptomyces spiramenti sp. nov., isolated from a deep-sea microbial mat.
Published in:
Archives of Microbiology, 2022, v. 204, n. 12, p. 1, doi. 10.1007/s00203-022-03326-6
By:
- Loughran, Rachel M.;
- Diefendorf, Caitlin M.;
- Reill-VanSise, Jassmine R.;
- Mitchell, Edward A.;
- Vining, Oliver B.;
- Gallegos, David A.;
- Miller, Gregory;
- Koyack, Marc J.;
- Oline, David K.;
- Rivers, Orion S.;
- Ushijima, Blake;
- Saw, Jimmy H.;
- Gaylor, Michael O.;
- McPhail, Kerry L.;
- Videau, Patrick
Publication type:
Article
Complete Genome Sequencing of a Novel Gloeobacter Species from a Waterfall Cave in Mexico.
Published in:
Genome Biology & Evolution, 2021, v. 13, n. 12, p. 1, doi. 10.1093/gbe/evab264
By:
- Saw, Jimmy H;
- Cardona, Tanai;
- Montejano, Gustavo
Publication type:
Article
Fluctibacter corallii gen. nov., sp. nov., isolated from the coral Montipora capitata on a reef in Kāneʻohe Bay, Oʻahu, Hawaiʻi, reclassification of Aestuariibacter halophilus as Fluctibacter halophilus comb. nov., and Paraglaciecola oceanifecundans as a later heterotypic synonym of Paraglaciecola agarilytica
Published in:
Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-01934-4
By:
- Emsley, Sarah A.;
- Loughran, Rachel M.;
- Shlafstein, Maximillian D.;
- Pfannmuller, Kaysa M.;
- De La Flor, Yesmarie T.;
- Lein, Charles G.;
- Dove, Nicholas C.;
- Koyack, Marc J.;
- Oline, David K.;
- Hanson, Thomas E.;
- Videau, Patrick;
- Saw, Jimmy H.;
- Ushijima, Blake
Publication type:
Article
Fluctibacter corallii gen. nov., sp. nov., isolated from the coral Montipora capitata on a reef in Kāneʻohe Bay, Oʻahu, Hawaiʻi, reclassification of Aestuariibacter halophilus as Fluctibacter halophilus comb. nov., and Paraglaciecola oceanifecundans as a later heterotypic synonym of Paraglaciecola agarilytica
Published in:
Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-01934-4
By:
- Emsley, Sarah A.;
- Loughran, Rachel M.;
- Shlafstein, Maximillian D.;
- Pfannmuller, Kaysa M.;
- De La Flor, Yesmarie T.;
- Lein, Charles G.;
- Dove, Nicholas C.;
- Koyack, Marc J.;
- Oline, David K.;
- Hanson, Thomas E.;
- Videau, Patrick;
- Saw, Jimmy H.;
- Ushijima, Blake
Publication type:
Article
Fluctibacter corallii gen. nov., sp. nov., isolated from the coral Montipora capitata on a reef in Kāneʻohe Bay, Oʻahu, Hawaiʻi, reclassification of Aestuariibacter halophilus as Fluctibacter halophilus comb. nov., and Paraglaciecola oceanifecundans as a later heterotypic synonym of Paraglaciecola agarilytica.
Published in:
Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-01934-4
By:
- Emsley, Sarah A.;
- Loughran, Rachel M.;
- Shlafstein, Maximillian D.;
- Pfannmuller, Kaysa M.;
- De La Flor, Yesmarie T.;
- Lein, Charles G.;
- Dove, Nicholas C.;
- Koyack, Marc J.;
- Oline, David K.;
- Hanson, Thomas E.;
- Videau, Patrick;
- Saw, Jimmy H.;
- Ushijima, Blake
Publication type:
Article
Complete genome of Vibrio japonicus strain JCM 31412<sup> T</sup> and assessment of the Nereis clade of the genus Vibrio.
Published in:
Antonie van Leeuwenhoek, 2023, v. 116, n. 2, p. 129, doi. 10.1007/s10482-022-01784-y
By:
- Shlafstein, Maximillian D.;
- Emsley, Sarah A.;
- Loughran, Rachel M.;
- O'Hanlon, Samantha M.;
- Ushijima, Blake;
- Videau, Patrick;
- Saw, Jimmy H.
Publication type:
Article
Vibrio tetraodonis subsp. pristinus subsp. nov., isolated from the coral Acropora cytherea at Palmyra Atoll, and creation and emended description of Vibrio tetraodonis subsp. tetraodonis subsp. nov.
Published in:
Antonie van Leeuwenhoek, 2022, v. 115, n. 9, p. 1215, doi. 10.1007/s10482-022-01766-0
By:
- Loughran, Rachel M.;
- Emsley, Sarah A.;
- Jefferson, Tori;
- Wasson, Benjamin J.;
- Deadmond, Monica C.;
- Knauss, Taylor L.;
- Pfannmuller, Kaysa M.;
- Lippert, Katherine J.;
- Miller, Gregory;
- Cline, Lauren C.;
- Oline, David K.;
- Koyack, Marc J.;
- Grant-Beurmann, Silvia;
- Gaylor, Michael O.;
- Saw, Jimmy H.;
- Ushijima, Blake;
- Videau, Patrick
Publication type:
Article
Complex archaea that bridge the gap between prokaryotes and eukaryotes.
Published in:
Nature, 2015, v. 521, n. 7551, p. 173, doi. 10.1038/nature14447
By:
- Spang, Anja;
- Saw, Jimmy H.;
- Jørgensen, Steffen L.;
- Zaremba-Niedzwiedzka, Katarzyna;
- Martijn, Joran;
- Lind, Anders E.;
- van Eijk, Roel;
- Schleper, Christa;
- Guy, Lionel;
- Ettema, Thijs J. G.
Publication type:
Article
Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution.
Published in:
Archaea, 2013, p. 1, doi. 10.1155/2013/202358
By:
- Spang, Anja;
- Martijn, Joran;
- Saw, Jimmy H.;
- Lind, Anders E.;
- Guy, Lionel;
- Ettema, Thijs J. G.
Publication type:
Article
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.
Published in:
Biology Direct, 2008, v. 3, p. 1, doi. 10.1186/1745-6150-3-26
By:
- Hou, Shaobin;
- Makarova, Kira S.;
- Saw, Jimmy H. W.;
- Senin, Pavel;
- Ly, Benjamin V.;
- Zhemin Zhou;
- Yan Ren;
- Jianmei Wang;
- Galperin, Michael Y.;
- Omelchenko, Marina V.;
- Wolf, Yuri I.;
- Yutin, Natalya;
- Koonin, Eugene V.;
- Stott, Matthew B.;
- Mountain, Bruce W.;
- Crowe, Michelle A.;
- Smirnova, Angela V.;
- Dunfield, Peter F.;
- Lu Feng;
- Lei Wang
Publication type:
Article
Genome‐based taxonomic analysis of the genus Pseudoalteromonas reveals heterotypic synonyms.
Published in:
Environmental Microbiology, 2024, v. 26, n. 7, p. 1, doi. 10.1111/1462-2920.16672
By:
- Videau, Patrick;
- Shlafstein, Maximillian D.;
- Oline, David K.;
- Givan, Scott A.;
- Chapman, Linda Fleet;
- Strangman, Wendy K.;
- Hahnke, Richard L.;
- Saw, Jimmy H.;
- Ushijima, Blake
Publication type:
Article

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