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Synthetic Epigenetic Reprogramming of Mesenchymal to Epithelial States Using the CRISPR/dCas9 Platform in Triple Negative Breast Cancer.
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- Advanced Science, 2023, v. 10, n. 22, p. 1, doi. 10.1002/advs.202301802
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Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02728-5
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- Article
Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02728-5
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- Article
Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes.
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- Plant Physiology, 2020, v. 184, n. 1, p. 148, doi. 10.1104/pp.20.00136
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- Article
Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
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- Nature, 2014, v. 514, n. 7520, p. 126, doi. 10.1038/nature13843
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Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.20777
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Epigenomic landscapes of retinal rods and cones.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.11613
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Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.09343
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A modular dCas9-based recruitment platform for combinatorial epigenome editing.
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- Nucleic Acids Research, 2024, v. 52, n. 1, p. 474, doi. 10.1093/nar/gkad1108
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- Article
Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation.
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- Nucleic Acids Research, 2014, v. 42, n. 16, p. 10856, doi. 10.1093/nar/gku708
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- Article
Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17397-w
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Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16284-8
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- Article
Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35180-x
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Comprehensive evaluation of deconvolution methods for human brain gene expression.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28655-4
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Comprehensive evaluation of deconvolution methods for human brain gene expression.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28655-4
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- Article
Turning over DNA methylation in the mind.
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- Frontiers in Neuroscience, 2015, p. 1, doi. 10.3389/fnins.2015.00252
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schex avoids overplotting for large single-cell RNA-sequencing datasets.
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- Bioinformatics, 2020, v. 36, n. 7, p. 2291, doi. 10.1093/bioinformatics/btz907
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Embryonic Stem Cell-Derived Neurons as a Model System for Epigenome Maturation during Development.
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- Genes, 2023, v. 14, n. 5, p. 957, doi. 10.3390/genes14050957
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Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02048-6
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Systematic evaluation of chromatin immunoprecipitation sequencing to study histone occupancy in dormancy transitions of grapevine buds.
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- Tree Physiology, 2023, v. 43, n. 4, p. 675, doi. 10.1093/treephys/tpac146
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- Article
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
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- Nature, 2011, v. 473, n. 7347, p. 394, doi. 10.1038/nature10102
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- Article
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
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- Nature, 2011, v. 471, n. 7336, p. 68, doi. 10.1038/nature09798
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- Article
Human DNA methylomes at base resolution show widespread epigenomic differences.
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- Nature, 2009, v. 462, n. 7271, p. 315, doi. 10.1038/nature08514
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STAR: an integrated solution to management and visualization of sequencing data.
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- Bioinformatics, 2013, v. 29, n. 24, p. 3204, doi. 10.1093/bioinformatics/btt558
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Exploring the identity of individual plant cells in space and time.
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- New Phytologist, 2023, v. 240, n. 1, p. 61, doi. 10.1111/nph.19153
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Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03724-9
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Erratum: Embryonic transcription is controlled by maternally defined chromatin state.
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- Nature Communications, 2016, v. 7, n. 7, p. 12208, doi. 10.1038/ncomms12208
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- Article
Embryonic transcription is controlled by maternally defined chromatin state.
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- Nature Communications, 2015, v. 6, n. 12, p. 10148, doi. 10.1038/ncomms10148
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- Article
Synthetic memory circuits for stable cell reprogramming in plants.
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- Nature Biotechnology, 2022, v. 40, n. 12, p. 1862, doi. 10.1038/s41587-022-01383-2
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- Article
Early moderate prenatal alcohol exposure and maternal diet impact offspring DNA methylation across species.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.92135
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- Article
Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice ( Oryza sativa) coleoptiles under anoxia and re-oxygenation.
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- Plant Journal, 2017, v. 89, n. 4, p. 805, doi. 10.1111/tpj.13418
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- Article
Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
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- Plant Journal, 2016, v. 88, n. 4, p. 542, doi. 10.1111/tpj.13276
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The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress.
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- Plant Journal, 2009, v. 58, n. 1, p. 53, doi. 10.1111/j.1365-313X.2008.03761.x
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- Article
MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing.
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- Nature Protocols, 2015, v. 10, n. 3, p. 475, doi. 10.1038/nprot.2014.114
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methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0742-6
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- Article
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0742-6
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- Article
Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.
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- Plant Cell, 2017, v. 29, n. 8, p. 1836, doi. 10.1105/tpc.16.00828
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Zinc-dependent intermembrane space proteins stimulate import of carrier proteins into plant mitochondria.
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- Plant Journal, 2002, v. 30, n. 5, p. 555, doi. 10.1046/j.1365-313X.2002.01316.x
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- Article
The Mitochondrial Protein Import Machinery of Plants (MPIMP) database.
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- Nucleic Acids Research, 2003, v. 31, n. 1, p. 325, doi. 10.1093/nar/gkg055
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- Article
Regulatory remodeling in the allo-tetraploid frog Xenopus laevis.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1335-7
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Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1302-3
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- Article
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
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- Nature Biotechnology, 2010, v. 28, n. 10, p. 1097, doi. 10.1038/nbt.1682
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A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor
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- FEBS Letters, 2004, v. 557, n. 1-3, p. 109, doi. 10.1016/S0014-5793(03)01457-1
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- Article
Harnessing targeted DNA methylation and demethylation using dCas9.
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- Essays in Biochemistry, 2019, v. 63, n. 6, p. 813, doi. 10.1042/EBC20190029
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HOME: a histogram based machine learning approach for effective identification of differentially methylated regions.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2845-y
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Retention of paternal DNA methylome in the developing zebrafish germline.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10895-6
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- Article