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Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03773-2
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- Article
Phylogenetic interpretation of ontogenetic change: sorting out the actual and artefactual in an empirical case study of centrarchid fishes.
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- Zoological Journal of the Linnean Society, 1993, v. 107, n. 3, p. 175, doi. 10.1111/j.1096-3642.1993.tb00289.x
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- Article
The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach.
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- Journal of Ecology & Environment, 2023, v. 47, n. 1, p. 1, doi. 10.5141/jee.23.076
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- Article
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay110
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- Article
Gill-arch musculature of the quillback carpiodes cyprinus (cypriniformes: catostomidae) with a comparison to cyprinids.
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- Journal of Morphology, 2012, v. 273, n. 8, p. 909, doi. 10.1002/jmor.20030
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- Article
Segmentation and fusion on the midline: Basibranchial homologies in cypriniform fishes.
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- Journal of Morphology, 2012, v. 273, n. 7, p. 725, doi. 10.1002/jmor.20017
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- Article
Development of the paired fins in the paddlefish, Polyodon spathula.
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- Journal of Morphology, 2004, v. 261, n. 3, p. 334, doi. 10.1002/jmor.10253
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- Article
Integrating Evolution and Development: The Need for Bioinformatics in Evo-Devo.
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- BioScience, 2006, v. 56, n. 4, p. 301, doi. 10.1641/0006-3568(2006)56[301:IEADTN]2.0.CO;2
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- Article
The New "Just So" Stories.
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- 2005
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- Book Review
REMOVING FINALISM FROM DEVELOPMENTAL BIOLOGY.
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- 2004
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- Book Review
Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio.
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- Development Genes & Evolution, 2001, v. 211, n. 11, p. 555, doi. 10.1007/s00427-001-0186-z
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- Article
AN EXPERIMENTAL STUDY OF INTRASPECIFIC VARIATION, DEVELOPMENTAL TIMING, AND HETEROCHRONY IN FISHES.
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- Evolution, 2000, v. 54, n. 6, p. 2091, doi. 10.1554/0014-3820(2000)054[2091:AESOIV]2.0.CO;2
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- Article
A Unified Anatomy Ontology of the Vertebrate Skeletal System.
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- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
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- Article
Evolutionary Characters, Phenotypes and Ontologies : Curating Data from the Systematic Biology Literature.
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- PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010708
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- Article
REASSESSING THE ONTOGENETIC CRITERION: A RESPONSE TO PATTERSON.
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- Cladistics, 1996, v. 12, n. 2, p. 169, doi. 10.1111/j.1096-0031.1996.tb00200.x
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- Article
AN EMPIRICAL REJECTION OF THE ONTOGENETIC POLARITY CRITERION.
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- Cladistics, 1989, v. 5, n. 4, p. 409, doi. 10.1111/j.1096-0031.1989.tb00572.x
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- Article
The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age.
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- Systematic Biology, 2010, v. 59, n. 4, p. 369, doi. 10.1093/sysbio/syq013
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- Article
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.
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- Molecular Biology & Evolution, 2016, v. 33, n. 1, p. 13, doi. 10.1093/molbev/msv223
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- Article
Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio.
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- Developmental Dynamics, 2007, v. 236, n. 11, p. 3111, doi. 10.1002/dvdy.21352
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- Article
Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae).
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- Developmental Dynamics, 2003, v. 228, n. 3, p. 337
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- Article
rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits.
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- Methods in Ecology & Evolution, 2023, v. 14, n. 10, p. 2531, doi. 10.1111/2041-210X.14210
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- Article
Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.
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- Systematic Biology, 2022, v. 71, n. 6, p. 1290, doi. 10.1093/sysbio/syac022
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- Article
A Logical Model of Homology for Comparative Biology.
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- Systematic Biology, 2020, v. 69, n. 2, p. 345, doi. 10.1093/sysbio/syz067
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- Article
Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.
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- Systematic Biology, 2018, v. 67, n. 4, p. 559, doi. 10.1093/sysbio/syx098
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- Article
Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies.
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- Systematic Biology, 2015, v. 64, n. 6, p. 936, doi. 10.1093/sysbio/syv031
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- Article
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
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- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
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- Article
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.
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- Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-34
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- Article
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices.
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- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155680
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- Article
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.
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- PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149102
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- Article