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A world of opportunities with nanopore sequencing.
Published in:
Journal of Experimental Botany, 2017, v. 68, n. 20, p. 5419, doi. 10.1093/jxb/erx289
By:
- Leggett, Richard M.;
- Clark, Matthew D.
Publication type:
Article
Tools for pathogen genetic surveillance: Lessons from the ash dieback invasion of Europe.
Published in:
PLoS Pathogens, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.ppat.1012182
By:
- Peers, Jessica A.;
- Leggett, Richard M.;
- Clark, Matthew D.;
- McMullan, Mark
Publication type:
Article
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.
Published in:
Nature Biotechnology, 2019, v. 37, n. 7, p. 783, doi. 10.1038/s41587-019-0156-5
By:
- Charalampous, Themoula;
- Kay, Gemma L.;
- Richardson, Hollian;
- Aydin, Alp;
- Baldan, Rossella;
- Jeanes, Christopher;
- Rae, Duncan;
- Grundy, Sara;
- Turner, Daniel J.;
- Wain, John;
- Leggett, Richard M.;
- Livermore, David M.;
- O'Grady, Justin
Publication type:
Article
Capturing variation in metagenomic assembly graphs with MetaCortex.
Published in:
Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btad020
By:
- Martin, Samuel;
- Ayling, Martin;
- Patrono, Livia;
- Caccamo, Mario;
- Murcia, Pablo;
- Leggett, Richard M.
Publication type:
Article
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function.
Published in:
GigaScience, 2020, v. 9, n. 6, p. 1, doi. 10.1093/gigascience/giaa053
By:
- Reddington, Kate;
- Eccles, David;
- O'Grady, Justin;
- Drown, Devin M;
- Hansen, Lars Hestbjerg;
- Nielsen, Tue Kjærgaard;
- Ducluzeau, Anne-Lise;
- Leggett, Richard M;
- Heavens, Darren;
- Peel, Ned;
- Snutch, Terrance P;
- Bayega, Anthony;
- Oikonomopoulos, Spyridon;
- Ragoussis, Jiannis;
- Barry, Thomas;
- van der Helm, Eric;
- Jolic, Dino;
- Richardson, Hollian;
- Jansen, Hans;
- Tyson, John R
Publication type:
Article
Resistance gene enrichment sequencing ( Ren Seq) enables reannotation of the NB- LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations.
Published in:
Plant Journal, 2013, v. 76, n. 3, p. 530, doi. 10.1111/tpj.12307
By:
- Jupe, Florian;
- Witek, Kamil;
- Verweij, Walter;
- Śliwka, Jadwiga;
- Pritchard, Leighton;
- Etherington, Graham J.;
- Maclean, Dan;
- Cock, Peter J.;
- Leggett, Richard M.;
- Bryan, Glenn J.;
- Cardle, Linda;
- Hein, Ingo;
- Jones, Jonathan D.G.
Publication type:
Article
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02582-x
By:
- Martin, Samuel;
- Heavens, Darren;
- Lan, Yuxuan;
- Horsfield, Samuel;
- Clark, Matthew D.;
- Leggett, Richard M.
Publication type:
Article
Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129059
By:
- Daly, Gordon M.;
- Leggett, Richard M.;
- Rowe, William;
- Stubbs, Samuel;
- Wilkinson, Maxim;
- Ramirez-Gonzalez, Ricardo H.;
- Caccamo, Mario;
- Bernal, William;
- Heeney, Jonathan L.
Publication type:
Article
Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs.
Published in:
PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060058
By:
- Leggett, Richard M.;
- Ramirez-Gonzalez, Ricardo H.;
- Verweij, Walter;
- Kawashima, Cintia G.;
- Iqbal, Zamin;
- Jones, Jonathan D. G.;
- Caccamo, Mario;
- MacLean, Daniel
Publication type:
Article
Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet).
Published in:
Methods in Ecology & Evolution, 2019, v. 10, n. 10, p. 1690, doi. 10.1111/2041-210X.13265
By:
- Peel, Ned;
- Dicks, Lynn V.;
- Clark, Matthew D.;
- Heavens, Darren;
- Percival‐Alwyn, Lawrence;
- Cooper, Chris;
- Davies, Richard G.;
- Leggett, Richard M.;
- Yu, Douglas W.;
- Freckleton, Robert
Publication type:
Article
New approaches for metagenome assembly with short reads.
Published in:
Briefings in Bioinformatics, 2020, v. 21, n. 2, p. 584, doi. 10.1093/bib/bbz020
By:
- Ayling, Martin;
- Clark, Matthew D;
- Leggett, Richard M
Publication type:
Article
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01254-7
By:
- Duncan, Anthony;
- Barry, Kerrie;
- Daum, Chris;
- Eloe-Fadrosh, Emiley;
- Roux, Simon;
- Schmidt, Katrin;
- Tringe, Susannah G.;
- Valentin, Klaus U.;
- Varghese, Neha;
- Salamov, Asaf;
- Grigoriev, Igor V.;
- Leggett, Richard M.;
- Moulton, Vincent;
- Mock, Thomas
Publication type:
Article
Plants, pollinators and their interactions under global ecological change: The role of pollen DNA metabarcoding.
Published in:
Molecular Ecology, 2023, v. 32, n. 23, p. 6345, doi. 10.1111/mec.16689
By:
- Bell, Karen L.;
- Turo, Katherine J.;
- Lowe, Abigail;
- Nota, Kevin;
- Keller, Alexander;
- Encinas‐Viso, Francisco;
- Parducci, Laura;
- Richardson, Rodney T.;
- Leggett, Richard M.;
- Brosi, Berry J.;
- Burgess, Kevin S.;
- Suyama, Yoshihisa;
- de Vere, Natasha
Publication type:
Article
SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1819-8
By:
- Gihawi, Abraham;
- Rallapalli, Ghanasyam;
- Hurst, Rachel;
- Cooper, Colin S.;
- Leggett, Richard M.;
- Brewer, Daniel S.
Publication type:
Article
Reference-free SNP detection: dealing with the data deluge.
Published in:
BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S4-S10
By:
- Leggett, Richard M.;
- MacLean2, Dan
Publication type:
Article
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles.
Published in:
Bioinformatics, 2016, v. 32, n. 1, p. 142, doi. 10.1093/bioinformatics/btv540
By:
- Leggett, Richard M.;
- Heavens, Darren;
- Caccamo, Mario;
- Clark, Matthew D.;
- Davey, Robert P.
Publication type:
Article
NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries.
Published in:
Bioinformatics, 2014, v. 30, n. 4, p. 566, doi. 10.1093/bioinformatics/btt702
By:
- Leggett, Richard M.;
- Clavijo, Bernardo J.;
- Clissold, Leah;
- Clark, Matthew D.;
- Caccamo, Mario
Publication type:
Article
Alvis: a tool for contig and read ALignment VISualisation and chimera detection.
Published in:
BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04056-0
By:
- Martin, Samuel;
- Leggett, Richard M.
Publication type:
Article

Found: 18