Works matching AU Sederoff, Ronald

Results: 55

Ubiquitinated DA1 negatively regulates vascular cambium activity through modulating the stability of WOX4 in Populus.

Published in:

Plant Cell, 2022, v. 34, n. 9, p. 3364, doi. 10.1093/plcell/koac178

By:

Tang, Xianfeng;
Wang, Congpeng;
Chai, Guohua;
Wang, Dian;
Xu, Hua;
Liu, Yu;
He, Guo;
Liu, Shuqing;
Zhang, Yiran;
Kong, Yingzhen;
Li, Shengjun;
Lu, Mengzhu;
Sederoff, Ronald R;
Li, Quanzi;
Zhou, Gongke

Publication type:

Article

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Populus trichocarpa.

Published in:

Plant Cell, 2019, v. 31, n. 3, p. 602, doi. 10.1105/tpc.18.00620

By:

Chen, Hao;
Wang, Jack P.;
Liu, Huizi;
Li, Huiyu;
Lin, Ying-Chung Jimmy;
Shi, Rui;
Yang, Chenmin;
Gao, Jinghui;
Zhou, Chenguang;
Li, Quanzi;
Sederoff, Ronald R.;
2, Wei Li;
2, Vincent L. Chiang

Publication type:

Article

Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa.

Published in:

Plant Cell, 2014, v. 26, n. 3, p. 894, doi. 10.1105/tpc.113.120881

By:

Wang, Jack P.;
Naik, Punith P.;
Chen, Hsi-Chuan;
Shi, Rui;
Lin, Chien-Yuan;
Liu, Jie;
Shuford, Christopher M.;
Li, Quanzi;
Sun, Ying-Hsuan;
Tunlaya-Anukit, Sermsawat;
Williams, Cranos M.;
Muddiman, David C.;
Ducoste, Joel J.;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling.

Published in:

Plant Cell, 2014, v. 26, n. 3, p. 876, doi. 10.1105/tpc.113.119685

By:

Chen, Hsi-Chuan;
Song, Jina;
Wang, Jack P.;
Lin, Ying-Chung;
Ducoste, Joel;
Shuford, Christopher M.;
Liu, Jie;
Li, Quanzi;
Shi, Rui;
Nepomuceno, Angelito;
Isik, Fikret;
Muddiman, David C.;
Williams, Cranos;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

SND1 Transcription Factor–Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa.

Published in:

Plant Cell, 2013, v. 25, n. 11, p. 4324, doi. 10.1105/tpc.113.117697

By:

Lin, Ying-Chung;
Li, Wei;
Sun, Ying-Hsuan;
Kumari, Sapna;
Wei, Hairong;
Li, Quanzi;
Tunlaya-Anukit, Sermsawat;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.850054

By:

Li, Xiang;
Cai, Kewei;
Han, Zhiming;
Zhang, Shikai;
Sun, Anran;
Xie, Ying;
Han, Rui;
Guo, Ruixue;
Tigabu, Mulualem;
Sederoff, Ronald;
Pei, Xiaona;
Zhao, Chunli;
Zhao, Xiyang

Publication type:

Article

Morphological and Comparative Transcriptome Analysis of Three Species of Five-Needle Pines: Insights Into Phenotypic Evolution and Phylogeny.

Published in:

Frontiers in Plant Science, 2022, v. 12, p. 1, doi. 10.3389/fpls.2022.795631

By:

Li, Xiang;
Cai, Kewei;
Zhao, Qiushuang;
Li, Hanxi;
Wang, Xuelai;
Tigabu, Mulualem;
Sederoff, Ronald;
Ma, Wenjun;
Zhao, Xiyang

Publication type:

Article

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.727932

By:

Lin, Chien-Yuan;
Sun, Yi;
Song, Jina;
Chen, Hsi-Chuan;
Shi, Rui;
Yang, Chenmin;
Liu, Jie;
Tunlaya-Anukit, Sermsawat;
Liu, Baoguang;
Loziuk, Philip L.;
Williams, Cranos M.;
Muddiman, David C.;
Lin, Ying-Chung Jimmy;
Sederoff, Ronald R.;
Wang, Jack P.;
Chiang, Vincent L.

Publication type:

Article

Corrigendum: BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar.

Published in:

2021

By:

Wang, Qiao;
Dai, Xinren;
Pang, Hongying;
Cheng, Yanxia;
Huang, Xiong;
Li, Hui;
Yan, Xiaojing;
Lu, Fachuang;
Wei, Hairong;
Sederoff, Ronald R.;
Li, Quanzi

Publication type:

Correction Notice

BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAl5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.695223

By:

Wang, Qiao;
Dai, Xinren;
Pang, Hongying;
Cheng, Yanxia;
Huang, Xiong;
Li, Hui;
Yan, Xiaojing;
Lu, Fachuang;
Wei, Hairong;
Sederoff, Ronald R.;
Li, Quanzi

Publication type:

Article

Gene sdaB Is Involved in the Nematocidal Activity of Enterobacter ludwigii AA4 Against the Pine Wood Nematode Bursaphelenchus xylophilus.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.870519

By:

Zhao, Yu;
Yuan, Zhibo;
Wang, Shuang;
Wang, Haoyu;
Chao, Yanjie;
Sederoff, Ronald R.;
Sederoff, Heike;
Yan, He;
Pan, Jialiang;
Peng, Mu;
Wu, Di;
Borriss, Rainer;
Niu, Ben

Publication type:

Article

Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis.

Published in:

PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0193896

By:

Naik, Punith;
Wang, Jack P.;
Sederoff, Ronald;
Chiang, Vincent;
Williams, Cranos;
Ducoste, Joel J.

Publication type:

Article

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-312

By:

Novaes, Evandro;
Drost, Derek R.;
Farmerie, William G.;
Pappas Jr., Georgios J.;
Grattapaglia, Dario;
Sederoff, Ronald R.;
Kirst, Matias

Publication type:

Article

Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays.

Published in:

BMC Genomics, 2005, v. 6, p. 61, doi. 10.1186/1471-2164-6-61

By:

Wadenbäck, Johan;
Clapham, David H;
Craig, Deborah;
Sederoff, Ronald;
Peter, Gary F;
von Arnold, Sara;
Egertsdotter, Ulrika

Publication type:

Article

Plant biotechnology for lignocellulosic biofuel production.

Published in:

Plant Biotechnology Journal, 2014, v. 12, n. 9, p. 1174, doi. 10.1111/pbi.12273

By:

Li, Quanzi;
Song, Jian;
Peng, Shaobing;
Wang, Jack P.;
Qu, Guan‐Zheng;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes.

Published in:

Plant & Cell Physiology, 2010, v. 51, n. 1, p. 144, doi. 10.1093/pcp/pcp175

By:

Rui Shi;
Ying-Hsuan Sun;
Quanzi Li;
Heber, Steffen;
Sederoff, Ronald;
Chiang, Vincent L.

Publication type:

Article

Editorial: Forest Genomics and Biotechnology.

Published in:

2019

By:

Allona, Isabel;
Kirst, Matias;
Boerjan, Wout;
Strauss, Steven;
Sederoff, Ronald

Publication type:

Editorial

Enzyme-Enzyme Interactions in Monolignol Biosynthesis.

Published in:

Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2018.01942

By:

Wang, Jack P.;
Liu, Baoguang;
Sun, Yi;
Chiang, Vincent L.;
Sederoff, Ronald R.

Publication type:

Article

Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.585404

By:

Niu, Ben;
Wang, Weixiong;
Yuan, Zhibo;
Sederoff, Ronald R.;
Sederoff, Heike;
Chiang, Vincent L.;
Borriss, Rainer

Publication type:

Article

Genetic Architecture of Transcript-Level Variation in Differentiating Xylem of a Eucalyptus Hybrid.

Published in:

Genetics, 2005, v. 169, n. 4, p. 2295, doi. 10.1534/genetics.104.039198

By:

Kirst, Matias;
Basten, Christopher J.;
Myburg, Alexander A.;
Zhao-Bang Zeng;
Sederoff, Ronald R.;
McCouch, S. R.

Publication type:

Article

Genetics of Postzygotic Isolation in Eucalyptus: Whole-Genome Analysis of Barriers to Introgression in a Wide Interspecific Cross of Eucalyptus grandis and E. globulus.

Published in:

Genetics, 2004, v. 166, n. 3, p. 1405, doi. 10.1534/genetics.166.3.1405

By:

Myburg, Alexander A.;
Vogl, Claus;
Griffin, A. Rod;
Sederoff, Ronald R.;
Whetten, Ross W.

Publication type:

Article

Grafting for transgene containment.

Published in:

Nature Biotechnology, 2001, v. 19, n. 12, p. 1104, doi. 10.1038/nbt1201-1104

By:

Lev-Yadun, Simcha;
Sederoff, Ronald

Publication type:

Article

A physical map of the Chinese chestnut ( Castanea mollissima) genome and its integration with the genetic map.

Published in:

Tree Genetics & Genomes, 2013, v. 9, n. 2, p. 525, doi. 10.1007/s11295-012-0576-6

By:

Fang, Guang-Chen;
Blackmon, Barbara;
Staton, Margaret;
Nelson, C.;
Kubisiak, Thomas;
Olukolu, Bode;
Henry, David;
Zhebentyayeva, Tatyana;
Saski, Christopher;
Cheng, Chun-Huai;
Monsanto, Megan;
Ficklin, Stephen;
Atkins, Michael;
Georgi, Laura;
Barakat, Abdelali;
Wheeler, Nicholas;
Carlson, John;
Sederoff, Ronald;
Abbott, Albert

Publication type:

Article

Single‐cell RNA sequencing reveals a high‐resolution cell atlas of xylem in Populus.

Published in:

Journal of Integrative Plant Biology, 2021, v. 63, n. 11, p. 1906, doi. 10.1111/jipb.13159

By:

Li, Hui;
Dai, Xinren;
Huang, Xiong;
Xu, Mengxuan;
Wang, Qiao;
Yan, Xiaojing;
Sederoff, Ronald R.;
Li, Quanzi

Publication type:

Article

Modified Lignin and Delignification with a CAD-Deficient Loblolly Pine.

Published in:

Holzforschung: International Journal of the Biology, Chemistry, Physics, & Technology of Wood, 1999, v. 53, n. 4, p. 403

By:

MacKay, John;
Presnell, Tim;
Jameel, Hasan;
Taneda, Hidetaka;
O''Malley, David;
Sederoff, Ronald

Publication type:

Article

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa.

Published in:

New Phytologist, 2019, v. 222, n. 1, p. 244, doi. 10.1111/nph.15505

By:

Yan, Xiaojing;
Liu, Jie;
Kim, Hoon;
Liu, Baoguang;
Huang, Xiong;
Yang, Zhichang;
Lin, Ying‐Chung Jimmy;
Chen, Hao;
Yang, Chenmin;
Wang, Jack P.;
Muddiman, David C.;
Ralph, John;
Sederoff, Ronald R.;
Li, Quanzi;
Chiang, Vincent L.

Publication type:

Article

Molecular forest genetics comes of age.

Published in:

1991

By:

Harry, David;
Strauss, Steven;
Sederoff, Ronald

Publication type:

Report

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa.

Published in:

Planta: An International Journal of Plant Biology, 2017, v. 245, n. 5, p. 927, doi. 10.1007/s00425-016-2640-1

By:

Shi, Rui;
Wang, Jack;
Lin, Ying-Chung;
Li, Quanzi;
Sun, Ying-Hsuan;
Chen, Hao;
Sederoff, Ronald;
Chiang, Vincent

Publication type:

Article

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa.

Published in:

Planta: An International Journal of Plant Biology, 2013, v. 238, n. 3, p. 487, doi. 10.1007/s00425-013-1905-1

By:

Shi, Rui;
Shuford, Christopher;
Wang, Jack;
Sun, Ying-Hsuan;
Yang, Zhichang;
Chen, Hsi-Chuan;
Tunlaya-Anukit, Sermsawat;
Li, Quanzi;
Liu, Jie;
Muddiman, David;
Sederoff, Ronald;
Chiang, Vincent

Publication type:

Article

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis.

Published in:

Planta: An International Journal of Plant Biology, 2012, v. 236, n. 3, p. 795, doi. 10.1007/s00425-012-1663-5

By:

Wang, Jack;
Shuford, Christopher;
Li, Quanzi;
Song, Jina;
Lin, Ying-Chung;
Sun, Ying-Hsuan;
Chen, Hsi-Chuan;
Williams, Cranos;
Muddiman, David;
Sederoff, Ronald;
Chiang, Vincent

Publication type:

Article

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities.

Published in:

Planta: An International Journal of Plant Biology, 2012, v. 236, n. 3, p. 879, doi. 10.1007/s00425-012-1688-9

By:

Liu, Jie;
Shi, Rui;
Li, Quanzi;
Sederoff, Ronald;
Chiang, Vincent

Publication type:

Article

Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa.

Published in:

Planta: An International Journal of Plant Biology, 2010, v. 232, n. 6, p. 1281, doi. 10.1007/s00425-010-1253-3

By:

Rui Shi;
Chenmin Yang;
Shanfa Lu;
Sederoff, Ronald;
Chiang, Vincent L.

Publication type:

Article

An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein.

Published in:

Planta: An International Journal of Plant Biology, 2004, v. 218, n. 6, p. 916, doi. 10.1007/s00425-003-1175-4

By:

Busov, Victor B.;
Johannes, Eva;
Whetten, Ross W.;
Sederoff, Ronald R.;
Spiker, Steven L.;
Lanz-Garcia, Carmen;
Goldfarb, Barry

Publication type:

Article

Characterisation of a pine MYB that regulates lignification.

Published in:

Plant Journal, 2003, v. 36, n. 6, p. 743, doi. 10.1046/j.1365-313X.2003.01916.x

By:

Patzlaff, Astrid;
McInnis, Stephanie;
Courtenay, Adrian;
Surman, Christine;
Newman, Lisa J.;
Smith, Caroline;
Bevan, Michael W.;
Mansfield, Shawn;
Whetten, Ross W.;
Sederoff, Ronald R.;
Campbell, Malcolm M.

Publication type:

Article

The role of of laccase in lignification.

Published in:

Plant Journal, 1993, v. 4, n. 5, p. 751, doi. 10.1046/j.1365-313X.1993.04050751.x

By:

O'Malley, David M.;
Whetten, Ross;
Bao, Wuli;
Chen, Chen-Loung;
Sederoff, Ronald R.

Publication type:

Article

Exponential advances in Forest Genetics: the past 25 years and the next 25 weeks.

Published in:

2011

By:

Sederoff, Ronald

Publication type:

Abstract

Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees.

Published in:

Tree Physiology, 2000, v. 20, n. 7, p. 457, doi. 10.1093/treephys/20.7.457

By:

Yi Zhang;
Sederoff, Ronald R.;
Allona, Isabel

Publication type:

Article

Pines as Model Gymnosperms To Study Evolution, WoodFormation, and Perennial Growth.

Published in:

Journal of Plant Growth Regulation, 2000, v. 19, n. 3, p. 290, doi. 10.1007/s003440000045

By:

Lev-Yadun, Simcha;
Sederoff, Ronald

Publication type:

Article

Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross....

Published in:

Genetics, 1994, v. 137, n. 4, p. 1121, doi. 10.1093/genetics/137.4.1121

By:

Grattapaglia, Dario;
Sederoff, Ronald

Publication type:

Article

MAIZE MITOCHONDRIAL PLASMID S-1 SEQUENCES SHARE HOMOLOGY WITH CHLOROPLAST GENE PSBA.

Published in:

Genetics, 1986, v. 113, n. 2, p. 469

By:

SEDEROFF, RONALD R.;
RONALD, PAMELA;
BEDINGER, PATRICIA;
RIVIN, CAROL;
WALBOT, VIRGINIA;
BLAND, MOLLY;
LEVINGS III, C. S.

Publication type:

Article

Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana).

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 19, p. 10697, doi. 10.3390/ijms221910697

By:

Li, Xiang;
Li, Yan;
Zhao, Minghui;
Hu, Yanbo;
Meng, Fanjuan;
Song, Xingshun;
Tigabu, Mulualem;
Chiang, Vincent L.;
Sederoff, Ronald;
Ma, Wenjun;
Zhao, Xiyang

Publication type:

Article

Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007197

By:

Matthews, Megan L.;
Wang, Jack P.;
Sederoff, Ronald;
Chiang, Vincent L.;
Williams, Cranos M.

Publication type:

Article

Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood.

Published in:

Tree Physiology, 2020, v. 40, n. 1, p. 73, doi. 10.1093/treephys/tpz020

By:

Abbas, Manzar;
Peszlen, Ilona;
Shi, Rui;
Kim, Hoon;
Katahira, Rui;
Kafle, Kabindra;
Xiang, Zhouyang;
Huang, Xiong;
Min, Douyong;
Mohamadamin, Makarem;
Yang, Chenmin;
Dai, Xinren;
Yan, Xiaojing;
Park, Sunkyu;
Li, Yun;
Kim, Seong H;
Davis, Mark;
Ralph, John;
Sederoff, Ronald R;
Chiang, Vincent L

Publication type:

Article

The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac057

By:

Li, Xiang;
Cai, Kewei;
Zhang, Qinhui;
Pei, Xiaona;
Chen, Song;
Jiang, Luping;
Han, Zhiming;
Zhao, Minghui;
Li, Yan;
Zhang, Xinxin;
Li, Yuxi;
Zhang, Shikai;
Chen, Su;
Qu, Guanzheng;
Tigabu, Mulualem;
Chiang, Vincent L;
Sederoff, Ronald;
Zhao, Xiyang

Publication type:

Article

Genome-wide identification of the AlkB homologs gene family, PagALKBH9B and PagALKBH10B regulated salt stress response in Populus.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.994154

By:

Ye Zhao;
Qi Guo;
Sen Cao;
Yanting Tian;
Kunjin Han;
Yuhan Sun;
Juan Li;
Qingshan Yang;
Qingju Ji;
Sederoff, Ronald;
Yun Li

Publication type:

Article

A simple improved-throughput xylem protoplast system for studying wood formation.

Published in:

Nature Protocols, 2014, v. 9, n. 9, p. 2194, doi. 10.1038/nprot.2014.147

By:

Lin, Ying-Chung;
Li, Wei;
Chen, Hao;
Li, Quanzi;
Sun, Ying-Hsuan;
Shi, Rui;
Lin, Chien-Yuan;
Wang, Jack P;
Chen, Hsi-Chuan;
Chuang, Ling;
Qu, Guan-Zheng;
Sederoff, Ronald R;
Chiang, Vincent L

Publication type:

Article

A robust chromatin immunoprecipitation protocol for studying transcription factor–DNA interactions and histone modifications in wood-forming tissue.

Published in:

Nature Protocols, 2014, v. 9, n. 9, p. 2180, doi. 10.1038/nprot.2014.146

By:

Li, Wei;
Lin, Ying-Chung;
Li, Quanzi;
Shi, Rui;
Lin, Chien-Yuan;
Chen, Hao;
Chuang, Ling;
Qu, Guan-Zheng;
Sederoff, Ronald R;
Chiang, Vincent L

Publication type:

Article

MicroRNAs in trees.

Published in:

Plant Molecular Biology, 2012, v. 80, n. 1, p. 37, doi. 10.1007/s11103-011-9864-z

By:

Sun, Ying-Hsuan;
Shi, Rui;
Zhang, Xing-Hai;
Chiang, Vincent;
Sederoff, Ronald

Publication type:

Article

Genomics: A spruce sequence.

Published in:

Nature, 2013, v. 497, n. 7451, p. 569, doi. 10.1038/nature12250

By:

Sederoff, Ronald

Publication type:

Article

An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use.

Published in:

Horticulturae, 2021, v. 7, n. 8, p. 1, doi. 10.3390/horticulturae7080252

By:

Yan Li;
Xiang Li;
Ming-Hui Zhao;
Zhong-Yi Pang;
Jia-Tong Wei;
Mulualem Tigabu;
Chiang, Vincent L.;
Sederoff, Heike;
Sederoff, Ronald;
Xi-Yang Zhao

Publication type:

Article