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DANTE and DANTE_LTR: lineage-centric annotation pipelines for long terminal repeat retrotransposons in plant genomes.
- Published in:
- NAR Genomics & Bioinformatics, 2024, v. 6, n. 3, p. 1, doi. 10.1093/nargab/lqae113
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- Article
PIGY, a new plant envelope-class LTR retrotransposon.
- Published in:
- Molecular Genetics & Genomics, 2005, v. 273, n. 1, p. 43, doi. 10.1007/s00438-004-1092-7
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- Publication type:
- Article
Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 1, p. 29, doi. 10.1534/g3.115.023242
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- Publication type:
- Article
Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa.
- Published in:
- Genome Biology & Evolution, 2013, v. 5, n. 4, p. 769, doi. 10.1093/gbe/evt049
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- Publication type:
- Article
Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 9, p. 575, doi. 10.1093/gbe/evs038
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- Publication type:
- Article
Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 4, p. 575, doi. 10.1093/gbe/evs038
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- Publication type:
- Article
Flow Sorting and Sequencing Meadow Fescue Chromosome 4F<sup>1[C][w]</sup>.
- Published in:
- Plant Physiology, 2013, v. 163, n. 3, p. 1323, doi. 10.1104/pp.113.224105
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- Publication type:
- Article
KNL1 and NDC80 represent new universal markers for the detection of functional centromeres in plants.
- Published in:
- Chromosome Research, 2024, v. 32, n. 1, p. 1, doi. 10.1007/s10577-024-09747-x
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- Publication type:
- Article
Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.
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- Chromosome Research, 2008, v. 16, n. 7, p. 961, doi. 10.1007/s10577-008-1254-2
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- Article
Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement.
- Published in:
- Genetics, 2006, v. 173, n. 2, p. 1047, doi. 10.1534/genetics.106.056259
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- Publication type:
- Article
Sobo, a Recently Amplified Satellite Repeat of Potato, and Its Implications for the Origin of Tandemly Repeated Sequences.
- Published in:
- Genetics, 2005, v. 170, n. 3, p. 1231, doi. 10.1534/genetics.105.041087
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- Publication type:
- Article
TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 12, p. 1, doi. 10.1093/nar/gkx257
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- Publication type:
- Article
Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi‐omics approach.
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- Plant Genome, 2022, v. 15, n. 1, p. 1, doi. 10.1002/tpg2.20191
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- Publication type:
- Article
Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes.
- Published in:
- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00234
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- Publication type:
- Article
Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.
- Published in:
- Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00613
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- Publication type:
- Article
Plant centromeric retrotransposons: a structural and cytogenetic perspective.
- Published in:
- Mobile DNA, 2011, v. 2, n. 1, p. 1, doi. 10.1186/1759-8753-2-4
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- Publication type:
- Article
Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains.
- Published in:
- PLoS Genetics, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pgen.1002777
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- Publication type:
- Article
A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons.
- Published in:
- Genetica, 2011, v. 139, n. 11/12, p. 1543, doi. 10.1007/s10709-012-9654-9
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- Publication type:
- Article
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.
- Published in:
- Bioinformatics, 2013, v. 29, n. 6, p. 792, doi. 10.1093/bioinformatics/btt054
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- Publication type:
- Article
Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data.
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- Bioinformatics, 2010, v. 26, n. 17, p. 2101, doi. 10.1093/bioinformatics/btq343
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- Article
Cloning and Characterization of New Repetitive Sequences in Field Bean (Vicia faba L.).
- Published in:
- Annals of Botany, 2000, v. 85, n. 1, p. 157, doi. 10.1006/anbo.1999.0986
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- Publication type:
- Article
Green Fluorescent Protein Targeted to the Nucleus, a Transgenic Phenotype Useful for Studies in Plant Biology.
- Published in:
- Annals of Botany, 1999, v. 83, n. 6, p. 645, doi. 10.1006/anbo.1999.0866
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- Publication type:
- Article
Cloning and Characterization of New Repetitive Sequences in Field Bean (Vicia fabaL.).
- Published in:
- Annals of Botany, 1999, v. 83, n. 5, p. 535
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- Publication type:
- Article
Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification.
- Published in:
- Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-018-0144-1
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- Publication type:
- Article
Graph-based clustering and characterization ofrepetitive sequences in next-generationsequencing data.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 378, doi. 10.1186/1471-2105-11-378
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- Publication type:
- Article
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes.
- Published in:
- PLoS Genetics, 2023, v. 18, n. 2, p. 1, doi. 10.1371/journal.pgen.1010633
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- Publication type:
- Article
The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity.
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- New Phytologist, 2022, v. 236, n. 2, p. 433, doi. 10.1111/nph.18323
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- Publication type:
- Article
Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta.
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- New Phytologist, 2021, v. 229, n. 4, p. 2365, doi. 10.1111/nph.17003
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- Article
Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes.
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- New Phytologist, 2019, v. 223, n. 3, p. 1340, doi. 10.1111/nph.15875
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- Article
Analysis of the giant genomes of Fritillaria ( Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size.
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- New Phytologist, 2015, v. 208, n. 2, p. 596, doi. 10.1111/nph.13471
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- Publication type:
- Article
Differential Genome Size and Repetitive DNA Evolution in Diploid Species of Melampodium sect. Melampodium (Asteraceae).
- Published in:
- Frontiers in Plant Science, 2020, p. 1, doi. 10.3389/fpls.2020.00362
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- Article
Mitotic Spindle Attachment to the Holocentric Chromosomes of Cuscuta europaea Does Not Correlate With the Distribution of CENH3 Chromatin.
- Published in:
- Frontiers in Plant Science, 2020, v. 10, p. 1, doi. 10.3389/fpls.2019.01799
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- Publication type:
- Article
Genome-Wide Analysis of Repeat Diversity across the Family Musaceae.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098918
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- Article
Independent, Rapid and Targeted Loss of Highly Repetitive DNA in Natural and Synthetic Allopolyploids of Nicotiana tabacum.
- Published in:
- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036963
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- Publication type:
- Article
Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027335
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- Article
Implementing microarrays for the study of plant genomics.
- Published in:
- 1999
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- Publication type:
- Abstract
Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris).
- Published in:
- BMC Plant Biology, 2016, v. 16, p. 1, doi. 10.1186/s12870-016-0805-5
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- Publication type:
- Article
Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing.
- Published in:
- BMC Plant Biology, 2010, v. 10, p. 204, doi. 10.1186/1471-2229-10-204
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- Publication type:
- Article
Survey of extrachromosomal circular DNA derived from plant satellite repeats.
- Published in:
- BMC Plant Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2229-8-90
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- Publication type:
- Article
High-copy sequences reveal distinct evolution of the rye B chromosome.
- Published in:
- New Phytologist, 2013, v. 199, n. 2, p. 550, doi. 10.1111/nph.12289
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- Publication type:
- Article
Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea.
- Published in:
- Plant Journal, 2015, v. 84, n. 6, p. 1087, doi. 10.1111/tpj.13058
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- Publication type:
- Article
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences.
- Published in:
- Plant Journal, 2013, v. 74, n. 5, p. 829, doi. 10.1111/tpj.12168
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- Publication type:
- Article
The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.
- Published in:
- Plant Journal, 2013, v. 73, n. 4, p. 555, doi. 10.1111/tpj.12054
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- Publication type:
- Article
Holocentromeres can consist of merely a few megabase-sized satellite arrays.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38922-7
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- Publication type:
- Article
Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species.
- Published in:
- Molecular Biology & Evolution, 2015, v. 32, n. 7, p. 1862, doi. 10.1093/molbev/msv070
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- Publication type:
- Article
Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae.
- Published in:
- Molecular Biology & Evolution, 2012, v. 29, n. 11, p. 3601
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- Publication type:
- Article
Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs.
- Published in:
- Molecular Biology & Evolution, 2011, v. 28, n. 10, p. 2843, doi. 10.1093/molbev/msr112
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- Publication type:
- Article
Transcription and Evolutionary Dynamics of the Centromeric Satellite Repeat CentO in Rice.
- Published in:
- Molecular Biology & Evolution, 2006, v. 23, n. 12, p. 2505, doi. 10.1093/molbev/msl127
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- Publication type:
- Article
Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats.
- Published in:
- Plant Journal, 2020, v. 101, n. 2, p. 484, doi. 10.1111/tpj.14546
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- Publication type:
- Article
Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda.
- Published in:
- Plant Journal, 2019, v. 99, n. 6, p. 1066, doi. 10.1111/tpj.14380
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- Publication type:
- Article