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Simplified methods for variance estimation in microbiome abundance count data analysis.
Published in:
Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1458851
By:
- Shi, Yiming;
- Liu, Lili;
- Chen, Jun;
- Wylie, Kristine M.;
- Wylie, Todd N.;
- Stout, Molly J.;
- Wang, Chan;
- Zhang, Haixiang;
- Shih, Ya-Chen T.;
- Xu, Xiaoyi;
- Zhang, Ai;
- Park, Sung Hee;
- Jiang, Hongmei;
- Liu, Lei
Publication type:
Article
Simplified methods for variance estimation in microbiome abundance count data analysis.
Published in:
Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1458851
By:
- Yiming Shi;
- Lili Liu;
- Jun Chen;
- Wylie, Kristine M.;
- Wylie, Todd N.;
- Stout, Molly J.;
- Chan Wang;
- Haixiang Zhang;
- Shih, Ya-Chen T.;
- Xiaoyi Xu;
- Ai Zhang;
- Sung Hee Park;
- Hongmei Jiang;
- Lei Liu
Publication type:
Article
Carriage of the Toxic Shock Syndrome Toxin Gene by Contemporary Community-Associated Staphylococcus aureus Isolates.
Published in:
Journal of the Pediatric Infectious Diseases Society, 2019, v. 8, n. 5, p. 470, doi. 10.1093/jpids/piy098
By:
- Parrish, Katelyn L;
- Wylie, Kristine M;
- Reich, Patrick J;
- Hogan, Patrick G;
- Wylie, Todd N;
- Kennedy, Colleen R;
- Lainhart, William;
- Hunstad, David A;
- Burnham, Carey-Ann D;
- Fritz, Stephanie A
Publication type:
Article
Resurgence of Rotavirus Genotype G12 in St. Louis During the 2014-2015 Rotavirus Season.
Published in:
Journal of the Pediatric Infectious Diseases Society, 2017, v. 6, n. 4, p. 346, doi. 10.1093/jpids/piw065
By:
- Wylie, Kristine M.;
- Stanley, Katherine M.;
- TeKippe, Erin McElvania;
- Mihindukulasuriya, Kusal;
- Storch, Gregory A.
Publication type:
Article
Emergence of Rotavirus G12P[8] in St. Louis During the 2012-2013 Rotavirus Season.
Published in:
Journal of the Pediatric Infectious Diseases Society, 2015, v. 4, n. 4, p. e84, doi. 10.1093/jpids/piu090
By:
- Wylie, Kristine M.;
- Weinstock, George M.;
- Storch, Gregory A.
Publication type:
Article
Enterovirus D68-Associated Acute Respiratory Distress Syndrome in Adult, United States, 2014.
Published in:
Emerging Infectious Diseases, 2015, p. 914, doi. 10.3201/eid2105.142033
By:
- Farrell, John J.;
- Ikladios, Ossama;
- Wylie, Kristine M.;
- O'Rourke, Lindsay M.;
- Lowery, Kristin S.;
- Cromwell, Jenna S.;
- Wylie, Todd N.;
- Vazquez Melendez, Elsa L.;
- Makhoul, Yves;
- Sampath, Rangarajan;
- Bonomo, Robert A.;
- Storch, Gregory A.
Publication type:
Article
Genome Sequence of Enterovirus D68 from St. Louis, Missouri, USA.
Published in:
Emerging Infectious Diseases, 2015, v. 21, n. 1, p. 184, doi. 10.3201/eid2101.141605
By:
- Wylie, Kristine M.;
- Wylie, Todd N.;
- Orvedahl, Anthony;
- Buller, Richard S.;
- Herter, Brandi N.;
- Magrini, Vincent;
- Wilson, Richard K.;
- Storch, Gregory A.
Publication type:
Article
Astrovirus MLB2 Viremia in Febrile Child.
Published in:
Emerging Infectious Diseases, 2011, v. 17, n. 11, p. 2050, doi. 10.3201/eid1711.110496
By:
- Holtz, Lori R.;
- Wylie, Kristine M.;
- Sodergren, Erica;
- Jiang, Yanfang;
- Franz, Carl J.;
- Weinstock, George M.;
- Storch, Gregory A.;
- Wang, David
Publication type:
Article
The plasma virome in longitudinal samples from pregnant patients.
Published in:
Frontiers in Cellular & Infection Microbiology, 2023, v. 13, p. 1, doi. 10.3389/fcimb.2023.1061230
By:
- Stout, Molly J.;
- Brar, Anoop K.;
- Herter, Brandi N.;
- Rankin, Ananda;
- Wylie, Kristine M.
Publication type:
Article
Helping others enhances graduate student wellness and mental health.
Published in:
Nature Biotechnology, 2022, v. 40, n. 4, p. 618, doi. 10.1038/s41587-022-01275-5
By:
- Hermanstyne, Tracey O.;
- Johnson, Lauren;
- Wylie, Kristine M.;
- Skeath, James B.
Publication type:
Article
Increased Prevalence of Anellovirus in Pediatric Patients with Fever.
Published in:
PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050937
By:
- McElvania TeKippe, Erin;
- Wylie, Kristine M.;
- Deych, Elena;
- Sodergren, Erica;
- Weinstock, George;
- Storch, Gregory A.
Publication type:
Article
The "Most Wanted" Taxa from the Human Microbiome for Whole Genome Sequencing.
Published in:
PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041294
By:
- Fodor, Anthony A.;
- DeSantis, Todd Z.;
- Wylie, Kristine M.;
- Badger, Jonathan H.;
- Yuzhen Ye;
- Hepburn, Theresa;
- Ping Hu;
- Sodergren, Erica;
- Liolios, Konstantinos;
- Huot-Creasy, Heather;
- Birren, Bruce W.;
- Earl, Ashlee M.
Publication type:
Article
Sequence Analysis of the Human Virome in Febrile and Afebrile Children.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. e27735, doi. 10.1371/journal.pone.0027735
By:
- Wylie, Kristine M.;
- Mihindukulasuriya, Kathie A.;
- Sodergren, Erica;
- Weinstock, George M.;
- Storch, Gregory A.
Publication type:
Article
The transcriptional profile of coronary arteritis in Kawasaki disease.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2323-5
By:
- Rowley, Anne H.;
- Wylie, Kristine M.;
- Kim, Kwang-Youn A.;
- Pink, Adam J.;
- Yang, Amy;
- Reindel, Rebecca;
- Baker, Susan C.;
- Shulman, Stanford T.;
- Orenstein, Jan M.;
- Lingen, Mark W.;
- Weinstock, George M.;
- Wylie, Todd N.
Publication type:
Article
Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva.
Published in:
Microorganisms, 2023, v. 11, n. 5, p. 1163, doi. 10.3390/microorganisms11051163
By:
- Schaefer, Elizabeth A. F.;
- Chu, Shirley;
- Wylie, Kristine M.;
- Wylie, Todd N.;
- Griffith, Obi L.;
- Pearce, Jacqueline W.;
- Johnson, Gayle C.;
- Bryan, Jeffrey N.;
- Flesner, Brian K.
Publication type:
Article
Virome Analysis and Association of Positive Coxsackievirus B Serology during Pregnancy with Congenital Heart Disease.
Published in:
Microorganisms, 2023, v. 11, n. 2, p. 262, doi. 10.3390/microorganisms11020262
By:
- Garand, Mathieu;
- Huang, Susie S. Y.;
- Goessling, Lisa S.;
- Wan, Fei;
- Santillan, Donna A.;
- Santillan, Mark K.;
- Brar, Anoop;
- Wylie, Todd N.;
- Wylie, Kristine M.;
- Eghtesady, Pirooz
Publication type:
Article
A Case of Persistent Human Pegivirus Infection in Two Separate Pregnancies of a Woman.
Published in:
Microorganisms, 2022, v. 10, n. 10, p. 1925, doi. 10.3390/microorganisms10101925
By:
- Garand, Mathieu;
- Huang, Susie S. Y.;
- Goessling, Lisa S.;
- Santillan, Donna A.;
- Santillan, Mark K.;
- Brar, Anoop;
- Wylie, Todd N.;
- Wylie, Kristine M.;
- Eghtesady, Pirooz
Publication type:
Article
Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection.
Published in:
Frontiers in Cellular & Infection Microbiology, 2019, v. 9, p. N.PAG, doi. 10.3389/fcimb.2019.00014
By:
- Wylie, Kristine M.;
- Wylie, Todd N.;
- Minx, Patrick J.;
- Rosen, David A.
Publication type:
Article
Exploration of bacterial community classes in major human habitats.
Published in:
Genome Biology, 2014, v. 15, n. 5, p. 1, doi. 10.1186/gb-2014-15-5-r66
By:
- Yanjiao Zhou;
- Mihindukulasuriya, Kathie A.;
- Hongyu Gao;
- La Rosa, Patricio S.;
- Wylie, Kristine M.;
- Martin, John C.;
- Kota, Karthik;
- Shannon, William D.;
- Mitreva, Makedonka;
- Sodergren, Erica;
- Weinstock, George M.
Publication type:
Article
Biogeography of the ecosystems of the healthy human body.
Published in:
Genome Biology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/gb-2013-14-1-r1
By:
- Yanjiao Zhou;
- Hongyu Gao;
- Mihindukulasuriya, Kathie A.;
- La Rosa, Patricio S.;
- Wylie, Kristine M.;
- Vishnivetskaya, Tatiana;
- Podar, Mircea;
- Warner, Barb;
- Tarr, Phillip I.;
- Nelson, David E.;
- Fortenberry, J. Dennis;
- Holland, Martin J.;
- Burr, Sarah E.;
- Shannon, William D.;
- Sodergren, Erica;
- Weinstock, George M.
Publication type:
Article
Pathogen and Antibody Identification in Children with Encephalitis in Myanmar.
Published in:
Annals of Neurology, 2023, v. 93, n. 3, p. 615, doi. 10.1002/ana.26560
By:
- Galardi, Maria M.;
- Sowa, Gavin M.;
- Crockett, Cameron D.;
- Rudock, Robert;
- Smith, Alyssa E.;
- Shwe, Ei E.;
- San, Thidar;
- Linn, Kyaw;
- Aye, Aye Mya M.;
- Ramachandran, Prashanth S.;
- Zia, Maham;
- Wapniarski, Anne E.;
- Hawes, Isobel A.;
- Hlaing, Chaw S.;
- Kyu, Ei H.;
- Thair, Cho;
- Mar, Yi Y.;
- Nway, Nway;
- Storch, Gregory A.;
- Wylie, Kristine M.
Publication type:
Article
Metagenomic analysis of double-stranded DNA viruses in healthy adults.
Published in:
BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/s12915-014-0071-7
By:
- Wylie, Kristine M.;
- Mihindukulasuriya, Kathie A.;
- Yanjiao Zhou;
- Sodergren, Erica;
- Storch, Gregory A.;
- Weinstock, George M.
Publication type:
Article
Environmental Enteric Dysfunction and the Fecal Microbiota in Malawian Children.
Published in:
American Journal of Tropical Medicine & Hygiene, 2017, v. 96, n. 2, p. 473, doi. 10.4269/ajtmh.16-0617
By:
- Ordiz, M. Isabel;
- Stephenson, Kevin;
- Agapova, Sophia;
- Wylie, Kristine M.;
- Maleta, Ken;
- Martin, John;
- Trehan, Indi;
- Tarr, Phillip I.;
- Manary, Mark J.
Publication type:
Article
Tissue polymerase chain reaction for the diagnosis of cytomegalovirus disease after allogeneic hematopoietic cell transplantation.
Published in:
American Journal of Hematology, 2017, v. 92, n. 2, p. E19, doi. 10.1002/ajh.24609
By:
- Rashidi, Armin;
- Vij, Kiran R.;
- Buller, Richard S.;
- Wylie, Kristine M.;
- Storch, Gregory A.;
- DiPersio, John F.
Publication type:
Article
Dynamic host immune response in virus-associated cancers.
Published in:
Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0352-3
By:
- Cao, Song;
- Wylie, Kristine M.;
- Wyczalkowski, Matt A.;
- Karpova, Alla;
- Ley, Jessica;
- Sun, Sam;
- Mashl, R. Jay;
- Liang, Wen-Wei;
- Wang, Xiaowei;
- Johnson, Kimberly;
- DiPersio, John F.;
- Gay, Hiram;
- Ratner, Lee;
- Chen, Feng;
- Adkins, Douglas R.;
- Ding, Li
Publication type:
Article
Nucleotide resolution mapping of influenza A virus nucleoprotein-RNA interactions reveals RNA features required for replication.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-02886-w
By:
- Williams, Graham D.;
- Townsend, Dana;
- Wylie, Kristine M.;
- Kim, Preston J.;
- Amarasinghe, Gaya K.;
- Kutluay, Sebla B.;
- Boon, Adrianus C. M.
Publication type:
Article
Association of Antibiotics, Airway Microbiome, and Inflammation in Infants with Cystic Fibrosis.
Published in:
2017
By:
- Pittman, Jessica E.;
- Wylie, Kristine M.;
- Akers, Kathryn;
- Storch, Gregory A.;
- Hatch, Joseph;
- Quante, Jane;
- Frayman, Katherine B.;
- Clarke, Nadeene;
- Davis, Miriam;
- Stick, Stephen M.;
- Hall, Graham L.;
- Montgomery, Gregory;
- Ranganathan, Sarath;
- Davis, Stephanie D.;
- Ferkol, Thomas W.;
- Australian Respiratory Early Surveillance Team for Cystic Fibrosis
Publication type:
journal article
Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-42355-y
By:
- Papineau, Amber;
- Berhane, Yohannes;
- Wylie, Todd N.;
- Wylie, Kristine M.;
- Sharpe, Samuel;
- Lung, Oliver
Publication type:
Article
Evaluation of patient- versus provider-collected vaginal swabs for microbiome analysis during pregnancy.
Published in:
BMC Research Notes, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13104-018-3809-4
By:
- Wylie, Kristine M.;
- Blankenship, Stephanie A.;
- Tuuli, Methodius G.;
- Macones, George A.;
- Stout, Molly J.
Publication type:
Article
A Protein Epitope Targeted by the Antibody Response to Kawasaki Disease.
Published in:
Journal of Infectious Diseases, 2020, v. 222, n. 1, p. 158, doi. 10.1093/infdis/jiaa066
By:
- Rowley, Anne H;
- Baker, Susan C;
- Arrollo, David;
- Gruen, Leah J;
- Bodnar, Tetyana;
- Innocentini, Nancy;
- Hackbart, Matthew;
- Cruz-Pulido, Yazmin E;
- Wylie, Kristine M;
- Kim, Kwang-Youn A;
- Shulman, Stanford T
Publication type:
Article
A Protein Epitope Targeted by the Antibody Response to Kawasaki Disease.
Published in:
2020
By:
- Rowley, Anne H;
- Baker, Susan C;
- Arrollo, David;
- Gruen, Leah J;
- Bodnar, Tetyana;
- Innocentini, Nancy;
- Hackbart, Matthew;
- Cruz-Pulido, Yazmin E;
- Wylie, Kristine M;
- Kim, Kwang-Youn A;
- Shulman, Stanford T
Publication type:
journal article
Breakpoint Surveyor: a pipeline for structural variant visualization.
Published in:
Bioinformatics, 2017, v. 33, n. 19, p. 3121, doi. 10.1093/bioinformatics/btx362
By:
- Wyczalkowski, Matthew A.;
- Wylie, Kristine M.;
- Song Cao;
- McLellan, Michael D.;
- Flynn, Jennifer;
- Mo Huang;
- Kai Ye;
- Xian Fan;
- Ken Chen;
- Wendl, Michael C.;
- Li Ding
Publication type:
Article

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