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Integrating transcriptional activity in genome-scale models of metabolism.
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- BMC Systems Biology, 2017, v. 11, p. 81, doi. 10.1186/s12918-017-0507-0
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Analysis of the main active ingredients and bioactivities of essential oil from Osmanthus fragrans Var. thunbergii using a complex network approach.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0523-0
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Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.
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- BMC Systems Biology, 2017, v. 11, p. 69, doi. 10.1186/s12918-017-0506-1
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Microbiota dysbiosis in inflammatory bowel diseases: in silico investigation of the oxygen hypothesis.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0522-1
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Investigation on changes of modularity and robustness by edge-removal mutations in signaling networks.
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- BMC Systems Biology, 2017, v. 11, p. 57, doi. 10.1186/s12918-017-0505-2
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CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations.
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- BMC Systems Biology, 2017, v. 11, p. 45, doi. 10.1186/s12918-017-0504-3
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A linear programming computational framework integrates phosphor-proteomics and prior knowledge to predict drug efficacy.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0501-6
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Use of transcriptomic data for extending a model of the AppA/PpsR system in Rhodobacter sphaeroides.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0489-y
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OptPipe - a pipeline for optimizing metabolic engineering targets.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0515-0
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Hadamard Kernel SVM with applications for breast cancer outcome predictions.
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- BMC Systems Biology, 2017, v. 11, p. 163, doi. 10.1186/s12918-017-0514-1
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Constraint-based perturbation analysis with cluster Newton method: a case study of personalized parameter estimations with irinotecan whole-body physiologically based pharmacokinetic model.
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- BMC Systems Biology, 2017, v. 11, p. 151, doi. 10.1186/s12918-017-0513-2
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Detecting causality from short time-series data based on prediction of topologically equivalent attractors.
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- BMC Systems Biology, 2017, v. 11, p. 141, doi. 10.1186/s12918-017-0512-3
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MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs.
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- BMC Systems Biology, 2017, v. 11, p. 127, doi. 10.1186/s12918-017-0511-4
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Ontology-based systematic representation and analysis of traditional Chinese drugs against rheumatism.
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- BMC Systems Biology, 2017, v. 11, p. 113, doi. 10.1186/s12918-017-0510-5
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Construction and analysis of gene-gene dynamics influence networks based on a Boolean model.
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- BMC Systems Biology, 2017, v. 11, p. 101, doi. 10.1186/s12918-017-0509-y
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Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model.
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- BMC Systems Biology, 2017, v. 11, p. 91, doi. 10.1186/s12918-017-0508-z
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MitoCore: a curated constraint-based model for simulating human central metabolism.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0500-7
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A multiscale modeling study of particle size effects on the tissue penetration efficacy of drug-delivery nanoparticles.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0491-4
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Genome-wide analysis of E. coli cell-gene interactions.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0494-1
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Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas.
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- BMC Systems Biology, 2017, v. 11, p. 29, doi. 10.1186/s12918-017-0503-4
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Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0485-2
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A polynomial based model for cell fate prediction in human diseases.
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- BMC Systems Biology, 2017, v. 11, p. 15, doi. 10.1186/s12918-017-0502-5
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Systems healthcare: a holistic paradigm for tomorrow.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0521-2
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Identification of regulatory modules in genome scale transcription regulatory networks.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0493-2
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Linking physiologically-based pharmacokinetic and genome-scale metabolic networks to understand estradiol biology.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0520-3
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Multiscale positive feedbacks contribute to unidirectional gastric disease progression induced by helicobacter pylori infection.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0497-y
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Model checking optimal finite-horizon control for probabilistic gene regulatory networks.
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- BMC Systems Biology, 2017, v. 11, p. 75, doi. 10.1186/s12918-017-0481-6
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Identifying drug-pathway association pairs based on L<sub>2,1</sub>-integrative penalized matrix decomposition.
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- BMC Systems Biology, 2017, v. 11, p. 63, doi. 10.1186/s12918-017-0480-7
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Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence.
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- BMC Systems Biology, 2017, v. 11, p. 45, doi. 10.1186/s12918-017-0479-0
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A geometric method for contour extraction of Drosophila embryos.
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- BMC Systems Biology, 2017, v. 11, p. 35, doi. 10.1186/s12918-017-0478-1
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A unified frame of predicting side effects of drugs by using linear neighborhood similarity.
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- BMC Systems Biology, 2017, v. 11, p. 23, doi. 10.1186/s12918-017-0477-2
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Reconstructing evolutionary trees in parallel for massive sequences.
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- BMC Systems Biology, 2017, v. 11, p. 15, doi. 10.1186/s12918-017-0476-3
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Mining significant high utility gene regulation sequential patterns.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0475-4
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Estimating drivers of cell state transitions using gene regulatory network models.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0517-y
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A simple and accurate rule-based modeling framework for simulation of autocrine/ paracrine stimulation of glioblastoma cell motility and proliferation by L1CAM in 2-D culture.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0516-z
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GoldenPiCS: a Golden Gate-derived modular cloning system for applied synthetic biology in the yeast Pichia pastoris.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0492-3
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Gene gravity-like algorithm for disease gene prediction based on phenotype-specific network.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0519-9
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A framework to find the logic backbone of a biological network.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0482-5
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Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - part A.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0488-z
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Designing synthetic networks in silico: a generalised evolutionary algorithm approach.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0499-9
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Genetic toggle switch controlled by bacterial growth rate.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0483-4
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Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0495-0
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A computational study of the inhibition mechanisms of P-glycoprotein mediated paclitaxel efflux by kinase inhibitors.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0498-x
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Metabolic adaptation of two in silico mutants of Mycobacterium tuberculosis during infection.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0496-z
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Inferring gene regulatory networks from single-cell data: a mechanistic approach.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0487-0
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Monitoring of nutrient limitation in growing E. coli: a mathematical model of a ppGpp-based biosensor.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0490-5
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Multitype Bellman-Harris branching model provides biological predictors of early stages of adult hippocampal neurogenesis.
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- BMC Systems Biology, 2017, v. 11, p. 87, doi. 10.1186/s12918-017-0468-3
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Network pharmacological mechanisms of Vernonia anthelmintica (L.) in the treatment of vitiligo: Isorhamnetin induction of melanogenesis via up-regulation of melanin-biosynthetic genes.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0486-1
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Paracrine and autocrine regulation of gene expression by Wnt-inhibitor Dickkopf in wild-type and mutant hepatocytes.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0470-9
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Informed walks: whispering hints to gene hunters inside networks' jungle.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0473-6
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