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Integrating genomic data from high-throughput studies with computational modeling reveals differences in the molecular basis of hyposalivation between type 1 and type 2 diabetes.
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- Clinical Oral Investigations, 2018, v. 22, n. 1, p. 151, doi. 10.1007/s00784-017-2094-2
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- Article
How far from the SNP may the causative genes be?
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- Nucleic Acids Research, 2016, v. 44, n. 13, p. 6046, doi. 10.1093/nar/gkw500
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- Article
Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure.
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- Nucleic Acids Research, 2012, v. 40, p. W521, doi. 10.1093/nar/gks480
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- Article
Targeting the actin nucleation promoting factor WASp provides a therapeutic approach for hematopoietic malignancies.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25842-7
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- Article
DistilProtBert: a distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts.
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- Bioinformatics, 2022, v. 38, p. ii95, doi. 10.1093/bioinformatics/btac474
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- Article
Large Scale Analysis of Phenotype-Pathway Relationships Based on GWAS Results.
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- PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0100887
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- Article
Neighbor Overlap Is Enriched in the Yeast Interaction Network: Analysis and Implications.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039662
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- Article
Unveiling Protein Functions through the Dynamics of the Interaction Network.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017679
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- Article
Post-Streptococcal Auto-Antibodies Inhibit Protein Disulfide Isomerase and Are Associated with Insulin Resistance.
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- PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0012875
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- Article
Large-scale analysis of secondary structure changes in proteins suggests a role for disorder-to-order transitions in nucleotide binding proteins.
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- Proteins, 2010, v. 78, n. 2, p. 236, doi. 10.1002/prot.22531
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- Article
Proteins of the same fold and unrelated sequences have similar amino acid composition.
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- Proteins, 2006, v. 64, n. 1, p. 275, doi. 10.1002/prot.20964
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- Article
Epitome: database of structure-inferred antigenic epitopes.
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- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d777, doi. 10.1093/nar/gkj053
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- Article
Large-scale analysis of somatic hypermutations in antibodies reveals which structural regions, positions and amino acids are modified to improve affinity.
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- FEBS Journal, 2014, v. 281, n. 1, p. 306, doi. 10.1111/febs.12597
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- Article
Structural Consensus among Antibodies Defines the Antigen Binding Site.
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- PLoS Computational Biology, 2012, v. 8, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002388
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- Article
Protein-Protein Interaction Hotspots Carved into Sequences.
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- PLoS Computational Biology, 2007, v. 3, n. 7, p. e119, doi. 10.1371/journal.pcbi.0030119
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- Article
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.
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- Journal of Molecular Recognition, 2007, v. 20, n. 2, p. 75, doi. 10.1002/jmr.815
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- Article
De-novo protein function prediction using DNA binding and RNA binding proteins as a test case.
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- Nature Communications, 2016, v. 7, n. 11, p. 13424, doi. 10.1038/ncomms13424
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- Article
Prediction of DNA-binding residues from sequence.
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- Bioinformatics, 2007, v. 23, n. 13, p. i347, doi. 10.1093/bioinformatics/btm174
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- Article
ISIS: interaction sites identified from sequence.
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- Bioinformatics, 2007, v. 23, n. 2, p. e13, doi. 10.1093/bioinformatics/btl303
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- Article
Accurate profiling of full-length Fv in highly homologous antibody libraries using UMI tagged short reads.
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- Nucleic Acids Research, 2023, v. 51, n. 11, p. e61, doi. 10.1093/nar/gkad235
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- Article
A novel Fer/FerT targeting compound selectively evokes metabolic stress and necrotic death in malignant cells.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00832-w
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- Article
Predicted protein–protein interaction sites from local sequence information
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- FEBS Letters, 2003, v. 544, n. 1-3, p. 236, doi. 10.1016/S0014-5793(03)00456-3
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- Article
PEASE: predicting B-cell epitopes utilizing antibody sequence.
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- Bioinformatics, 2015, v. 31, n. 8, p. 1313, doi. 10.1093/bioinformatics/btu790
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- Article
PEASE: predicting B-cell epitopes utilizing antibody sequence.
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- 2015
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- Product Review
Non-local residue–residue contacts in proteins are more conserved than local ones.
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- Bioinformatics, 2013, v. 29, n. 3, p. 331, doi. 10.1093/bioinformatics/bts694
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- Article
Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins.
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- Bioinformatics, 2012, v. 28, n. 24, p. 3203, doi. 10.1093/bioinformatics/bts608
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- Article
Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks.
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- Bioinformatics, 2012, v. 28, n. 21, p. 2811, doi. 10.1093/bioinformatics/bts517
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- Article
The structural basis of antibody-antigen recognition.
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- Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00302
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- Article
The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops.
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- PEDS: Protein Engineering, Design & Selection, 2013, v. 26, n. 10, p. 599, doi. 10.1093/protein/gzt027
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- Article