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Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters.
Published in:
Genome Biology & Evolution, 2013, v. 5, n. 11, p. 2109, doi. 10.1093/gbe/evt159
By:
- Timme, Ruth E.;
- Pettengill, James B.;
- Allard, Marc W.;
- Strain, Errol;
- Barrangou, Rodolphe;
- Wehnes, Chris;
- Van Kessel, JoAnn S.;
- Karns, Jeffrey S.;
- Musser, Steven M.;
- Brown, Eric W.
Publication type:
Article
Unraveling the Evolution of Auxin Signaling.
Published in:
Plant Physiology, 2011, v. 155, n. 1, p. 209, doi. 10.1104/pp.110.168161
By:
- De Smet, Ive;
- Voß, Ute;
- Lau, Steffen;
- Wilson, Michael;
- Ning Shao;
- Timme, Ruth E.;
- Swarup, Ranjan;
- Kerr, Ian;
- Hodgman, Charlie;
- Bock, Ralph;
- Bennett, Malcolm;
- Jürgens, Gerd;
- Beeckman, Tom
Publication type:
Article
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-00740-7
By:
- Timme, Ruth E.;
- Lafon, Patricia C.;
- Balkey, Maria;
- Adams, Jennifer K.;
- Wagner, Darlene;
- Carleton, Heather;
- Strain, Errol;
- Hoffmann, Maria;
- Sabol, Ashley;
- Rand, Hugh;
- Lindsey, Rebecca;
- Sheehan, Deborah;
- Baugher, Joseph D.;
- Trees, Eija
Publication type:
Article
Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.
Published in:
Bioinformatics, 2004, v. 20, n. suppl_1, p. i355
By:
- Xu, Weijia;
- Briggs, Willard J.;
- Padolina, Joanna;
- Timme, Ruth E.;
- Liu, Wenguo;
- Linder, C. Randal;
- Miranker, Daniel P.
Publication type:
Article
Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.
Published in:
Bioinformatics, 2004, v. 20, p. i355
By:
- Xu, Weijia;
- Briggs, Willard J.;
- Padolina, Joanna;
- Timme, Ruth E.;
- Liu, Wenguo;
- Linder, C. Randal;
- Miranker, Daniel P.
Publication type:
Article
Antimicrobial and Genomic Characterization of Salmonella Nigeria from Pigs and Poultry in Ilorin, North-central, Nigeria.
Published in:
Journal of Infection in Developing Countries, 2021, v. 15, n. 12, p. 1899, doi. 10.3855/jidc.15025
By:
- Raufu, Ibrahim A.;
- Ahmed, Olayiwola A.;
- Aremu, Abdulfatai;
- Ameh, James A.;
- Timme, Ruth E.;
- Hendriksen, Rene S.;
- Ambali, AbdulGaniyu
Publication type:
Article
Editorial: Integration of NGS in clinical and public health microbiology workflows: applications, compliance, quality considerations.
Published in:
Frontiers in Public Health, 2024, p. 1, doi. 10.3389/fpubh.2024.1357098
By:
- Shangxin Yang;
- Kozyreva, Varvara K.;
- Timme, Ruth E.;
- Hemarajata, Peera
Publication type:
Article
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Published in:
GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac003
By:
- Griffiths, Emma J;
- Timme, Ruth E;
- Mendes, Catarina Inês;
- Page, Andrew J;
- Alikhan, Nabil-Fareed;
- Fornika, Dan;
- Maguire, Finlay;
- Campos, Josefina;
- Park, Daniel;
- Olawoye, Idowu B;
- Oluniyi, Paul E;
- Anderson, Dominique;
- Christoffels, Alan;
- da Silva, Anders Gonçalves;
- Cameron, Rhiannon;
- Dooley, Damion;
- Katz, Lee S;
- Black, Allison;
- Karsch-Mizrachi, Ilene;
- Barrett, Tanya
Publication type:
Article
Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars.
Published in:
PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123639
By:
- Pirone-Davies, Cary;
- Hoffmann, Maria;
- Roberts, Richard J.;
- Muruvanda, Tim;
- Timme, Ruth E.;
- Strain, Errol;
- Luo, Yan;
- Payne, Justin;
- Luong, Khai;
- Song, Yi;
- Tsai, Yu-Chih;
- Boitano, Matthew;
- Clark, Tyson A.;
- Korlach, Jonas;
- Evans, Peter S.;
- Allard, Marc W.
Publication type:
Article
Broad Phylogenomic Sampling and the Sister Lineage of Land Plants.
Published in:
PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029696
By:
- Timme, Ruth E.;
- Bachvaroff, Tsvetan R.;
- Delwiche, Charles F.
Publication type:
Article
Uncovering the evolutionary origin of plantmolecular processes: comparison of Coleochaete(Coleochaetales) and Spirogyra (Zygnematales)transcriptomes.
Published in:
BMC Plant Biology, 2010, v. 10, p. 96, doi. 10.1186/1471-2229-10-96
By:
- Timme, Ruth E.;
- Delwiche, Charles F.
Publication type:
Article
Origin of strigolactones in the green lineage.
Published in:
New Phytologist, 2012, v. 195, n. 4, p. 857, doi. 10.1111/j.1469-8137.2012.04209.x
By:
- Delaux, Pierre-Marc;
- Xie, Xiaonan;
- Timme, Ruth E.;
- Puech-Pages, Virginie;
- Dunand, Christophe;
- Lecompte, Emilie;
- Delwiche, Charles F.;
- Yoneyama, Koichi;
- Bécard, Guillaume;
- Séjalon-Delmas, Nathalie
Publication type:
Article
PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES.
Published in:
Journal of Phycology, 2009, v. 45, n. 5, p. 1163, doi. 10.1111/j.1529-8817.2009.00738.x
By:
- Handy, Sara M.;
- Bachvaroff, Tsvetan R.;
- Timme, Ruth E.;
- Wayne Coats, D.;
- Kim, Sunju;
- Delwiche, Charles F.
Publication type:
Article
HIGH-RESOLUTION PHYLOGENY FOR HELIANTHUS (ASTERACEAE) USING THE 18S-26S RIBOSOMAL DNA EXTERNAL TRANSCRIBED SPACER.
Published in:
American Journal of Botany, 2007, v. 94, n. 11, p. 1837, doi. 10.3732/ajb.94.11.1837
By:
- Timme, Ruth E.;
- Simpson, Beryl B.;
- Linder, C. Randal
Publication type:
Article
A COMPARATIVE ANALYSIS OF THE LACTUCA AND HELIANTHUS (ASTERACEAE) PLASTID GENOMES: IDENTIFICATION OF DIVERGENT REGIONS AND CATEGORIZATION OF SHARED REPEATS.
Published in:
American Journal of Botany, 2007, v. 94, n. 3, p. 302, doi. 10.3732/ajb.94.3.302
By:
- Timme, Ruth E.;
- Kuehl, Jennifer V.;
- Boore, Jeffrey L.;
- Jansen, Robert K.
Publication type:
Article
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.
Published in:
PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0198526
By:
- Lomonaco, Sara;
- Crawford, Matthew A.;
- Lascols, Christine;
- Timme, Ruth E.;
- Anderson, Kevin;
- Hodge, David R.;
- Fisher, Debra J.;
- Pillai, Segaran P.;
- Morse, Stephen A.;
- Khan, Erum;
- Hughes, Molly A.;
- Allard, Marc W.;
- Sharma, Shashi K.
Publication type:
Article
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
Published in:
PeerJ, 2023, p. 1, doi. 10.7717/peerj.14596
By:
- Kayikcioglu, Tunc;
- Amirzadegan, Jasmine;
- Rand, Hugh;
- Tesfaldet, Bereket;
- Timme, Ruth E.;
- Pettengil, James B.
Publication type:
Article
TreeToReads - a pipeline for simulating raw reads from phylogenies.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1592-1
By:
- McTavish, Emily Jane;
- Pettengill, James;
- Davis, Steven;
- Rand, Hugh;
- Strain, Errol;
- Allard, Marc;
- Timme, Ruth E.
Publication type:
Article

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