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- Title
MOCCASIN: converting MATLAB ODE models to SBML.
- Authors
Gómez, Harold F.; Hucka, Michael; Keating, Sarah M.; Nudelman, German; Iber, Dagmar; Sealfon, Stuart C.
- Abstract
Summary: MATLAB is popular in biological research forcreating and simulating models that use ordinary differential equations (ODEs). However, sharing or using these models outside of MATLAB is often problematic. A community standard such as Systems Biology Markup Language (SBML) can serve as a neutral exchange format, but translating models from MATLAB to SBML can be challenging--especially for legacy models not written with translation in mind. We developed MOCCASIN (Model ODE Converter for Creating Automated SBML INteroperability) to help. MOCCASIN can convert ODE- based MATLAB models of biochemical reaction networks into the SBML format.
- Subjects
MATLAB (Computer software); ORDINARY differential equations; DIFFERENTIAL equations; BIOCHEMISTRY; SYSTEMS biology
- Publication
Bioinformatics, 2016, Vol 32, Issue 12, p1905
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btw056