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A metabolic modeling-based framework for predicting trophic dependencies in native rhizobiomes of crop plants.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.94558
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- Article
Gene expression and metabolite profiling analyses of developing pomegranate fruit peel reveal interactions between anthocyanin and punicalagin production.
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- Tree Genetics & Genomes, 2019, v. 15, n. 2, p. N.PAG, doi. 10.1007/s11295-019-1329-6
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- Article
Assembly and dynamics of the apple carposphere microbiome during fruit development and storage.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.928888
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- Article
NetCom: A Network-Based Tool for Predicting Metabolic Activities of Microbial Communities Based on Interpretation of Metagenomics Data.
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- Microorganisms, 2021, v. 9, n. 9, p. 1838, doi. 10.3390/microorganisms9091838
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- Article
Effect of Washing, Waxing and Low-Temperature Storage on the Postharvest Microbiome of Apple.
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- Microorganisms, 2020, v. 8, n. 6, p. 944, doi. 10.3390/microorganisms8060944
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- Article
NetMet: A Network-Based Tool for Predicting Metabolic Capacities of Microbial Species and their Interactions.
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- Microorganisms, 2020, v. 8, n. 6, p. 840, doi. 10.3390/microorganisms8060840
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- Article
High-density NGS-based map construction and genetic dissection of fruit shape and rind netting in Cucumis melo.
- Published in:
- Theoretical & Applied Genetics, 2020, v. 133, n. 6, p. 1927, doi. 10.1007/s00122-020-03567-3
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- Article
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000690
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- Article
Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data.
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- PLoS Computational Biology, 2007, v. 3, n. 10, p. e206, doi. 10.1371/journal.pcbi.0030206
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- Article
A framework for the targeted recruitment of crop-beneficial soil taxa based on network analysis of metagenomics data.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-022-01438-1
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- Article
NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.
- Published in:
- 2012
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- Correction notice
NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.
- Published in:
- Bioinformatics, 2012, v. 28, n. 16, p. 2195, doi. 10.1093/bioinformatics/bts323
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- Publication type:
- Article
To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies.
- Published in:
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02254
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- Publication type:
- Article
Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01606
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- Publication type:
- Article
Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms.
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- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0098372
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- Article
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits.
- Published in:
- BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0449-x
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- Publication type:
- Article
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits.
- Published in:
- BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0449-x
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- Publication type:
- Article
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits.
- Published in:
- BMC Plant Biology, 2015, v. 15, n. 1, p. 71, doi. 10.1186/s12870-015-0449-x
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- Publication type:
- Article
Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4786-7
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- Article
Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins.
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- BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 142, doi. 10.1186/1471-2148-11-142
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- Article
Emergence, development and diversification of the TGF-β signalling pathway within the animal kingdom.
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- BMC Evolutionary Biology, 2009, v. 9, p. 1, doi. 10.1186/1471-2148-9-28
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- Article
Metabolic innovations towards the human lineage.
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- BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-247
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- Publication type:
- Article
Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples.
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- Environmental Microbiology, 2023, v. 25, n. 9, p. 1728, doi. 10.1111/1462-2920.16353
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- Article
Global analysis of the apple fruit microbiome: are all apples the same?
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- Environmental Microbiology, 2021, v. 23, n. 10, p. 6038, doi. 10.1111/1462-2920.15469
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- Article
NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0588-y
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- Article
Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-69509-7
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- Article
Transcriptomic Analysis of Soil Grown T. aestivum cv. Root to Reveal the Changes in Expression of Genes in Response to Multiple Nutrients Deficiency.
- Published in:
- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01025
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- Article
Host-Parasite-Bacteria Triangle: The Microbiome of the Parasitic Weed Phelipanche aegyptiaca and Tomato-Solanum lycopersicum (Mill.) as a Host.
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- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00269
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- Article
Association between translation efficiency and horizontal gene transfer within microbial communities.
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- Nucleic Acids Research, 2011, v. 39, n. 11, p. 4743, doi. 10.1093/nar/gkr054
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- Article
The large-scale organization of the bacterial network of ecological co-occurrence interactions.
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- Nucleic Acids Research, 2010, v. 38, n. 12, p. 3857, doi. 10.1093/nar/gkq118
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- Article
Engineering natural microbiomes toward enhanced bioremediation by microbiome modeling.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49098-z
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- Article
The Interplay between Scientific Overlap and Cooperation and the Resulting Gain in Co-Authorship Interactions.
- Published in:
- PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0137856
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- Publication type:
- Article
Multidimensional patterns of metabolic response in abiotic stress-induced growth of Arabidopsis thaliana.
- Published in:
- Plant Molecular Biology, 2016, v. 92, n. 6, p. 689, doi. 10.1007/s11103-016-0539-7
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- Article