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Differential expression analysis of RNA-seq data at single-base resolution.
- Published in:
- 2014
- By:
- Publication type:
- journal article
Corrigendum: Differential expression analysis of RNA-seq data at single-base resolution.
- Published in:
- Biostatistics, 2014, v. 15, n. 3, p. 584, doi. 10.1093/biostatistics/kxu022
- By:
- Publication type:
- Article
Differential expression analysis of RNA-seq data at single-base resolution.
- Published in:
- Biostatistics, 2014, v. 15, n. 3, p. 413, doi. 10.1093/biostatistics/kxt053
- By:
- Publication type:
- Article
An estimate of the science-wise false discovery rate and application to the top medical literature.
- Published in:
- Biostatistics, 2014, v. 15, n. 1, p. 1, doi. 10.1093/biostatistics/kxt007
- By:
- Publication type:
- Article
Rejoinder: An estimate of the science-wise false discovery rate and application to the top medical literature.
- Published in:
- Biostatistics, 2014, v. 15, n. 1, p. 39, doi. 10.1093/biostatistics/kxt038
- By:
- Publication type:
- Article
Significance analysis and statistical dissection of variably methylated regions.
- Published in:
- Biostatistics, 2012, v. 13, n. 1, p. 166, doi. 10.1093/biostatistics/kxr013
- By:
- Publication type:
- Article
SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies.
- Published in:
- Source Code for Biology & Medicine, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1751-0473-8-8
- By:
- Publication type:
- Article
Inflammatory Molecular Signature Associated With Infectious Agents in Psychosis.
- Published in:
- Schizophrenia Bulletin, 2014, v. 40, n. 5, p. 1, doi. 10.1093/schbul/sbu052
- By:
- Publication type:
- Article
Inflammatory Molecular Signature Associated With Infectious Agents in Psychosis.
- Published in:
- 2014
- By:
- Publication type:
- Journal Article
Improving the value of public RNA-seq expression data by phenotype prediction.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 9, p. 1, doi. 10.1093/nar/gky102
- By:
- Publication type:
- Article
Flexible expressed region analysis for RNA-seq with derfinder.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 2, p. 1, doi. 10.1093/nar/gkw852
- By:
- Publication type:
- Article
svaseq: removing batch effects and other unwanted noise from sequencing data.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 21, p. 000, doi. 10.1093/nar/gku864
- By:
- Publication type:
- Article
Reproducible RNA-seq analysis using recount2.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 4, p. 319, doi. 10.1038/nbt.3838
- By:
- Publication type:
- Article
Ballgown bridges the gap between transcriptome assembly and expression analysis.
- Published in:
- Nature Biotechnology, 2015, v. 33, n. 3, p. 243, doi. 10.1038/nbt.3172
- By:
- Publication type:
- Article
Sequencing technology does not eliminate biological variability.
- Published in:
- Nature Biotechnology, 2011, v. 29, n. 7, p. 572, doi. 10.1038/nbt.1910
- By:
- Publication type:
- Article
On the design and analysis of gene expression studies in human populations.
- Published in:
- 2007
- By:
- Publication type:
- Letter
The practical effect of batch on genomic prediction.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 3, p. 1, doi. 10.1515/1544-6115.1766
- By:
- Publication type:
- Article
The Joint Null Criterion for Multiple Hypothesis Tests.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2011, v. 10, n. 1, p. 1, doi. 10.2202/1544-6115.1673
- By:
- Publication type:
- Article
Evolution of cellular morpho-phenotypes in cancer metastasis.
- Published in:
- Scientific Reports, 2015, p. 18437, doi. 10.1038/srep18437
- By:
- Publication type:
- Article
recount3: summaries and queries for large-scale RNA-seq expression and splicing.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02533-6
- By:
- Publication type:
- Article
Cooperation between Referees and Authors Increases Peer Review Accuracy.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0026895
- By:
- Publication type:
- Article
A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data.
- Published in:
- Biometrics, 2013, v. 69, n. 3, p. 614, doi. 10.1111/biom.12060
- By:
- Publication type:
- Article
Asymptotic Conditional Singular Value Decomposition for High-Dimensional Genomic Data.
- Published in:
- Biometrics, 2011, v. 67, n. 2, p. 344, doi. 10.1111/j.1541-0420.2010.01455.x
- By:
- Publication type:
- Article
Tackling the widespread and critical impact of batch effects in high-throughput data.
- Published in:
- 2010
- By:
- Publication type:
- review
Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0808-5
- By:
- Publication type:
- Article
Gene set bagging for estimating the probability a statistically significant result will replicate.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-360
- By:
- Publication type:
- Article
Gene expression anti-profiles as a basis for accurate universal cancer signatures.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 272, doi. 10.1186/1471-2105-13-272
- By:
- Publication type:
- Article
A statistical approach to selecting and confirming validation targets in -omics experiments.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 150, doi. 10.1186/1471-2105-13-150
- By:
- Publication type:
- Article
Systems-level dynamic analyses of fate change in murine embryonic stem cells.
- Published in:
- Nature, 2009, v. 462, n. 7271, p. 358, doi. 10.1038/nature08575
- By:
- Publication type:
- Article
Sequestration: inadvertently killing biomedical research to score political points.
- Published in:
- Genome Biology, 2013, v. 14, n. 3, p. 109, doi. 10.1186/gb-2013-14-3-109
- By:
- Publication type:
- Article
Widespread splicing of repetitive element loci into coding regions of gene transcripts.
- Published in:
- Human Molecular Genetics, 2016, v. 25, n. 22, p. 4962, doi. 10.1093/hmg/ddw321
- By:
- Publication type:
- Article
Discussion of 'visualizing statistical models: Removing the blindfold'.
- Published in:
- Statistical Analysis & Data Mining, 2015, v. 8, n. 4, p. 240, doi. 10.1002/sam.11275
- By:
- Publication type:
- Article
Statistics: P values are just the tip of the iceberg.
- Published in:
- 2015
- By:
- Publication type:
- Opinion
Personalized medicine: Keep a way open for tailored treatments.
- Published in:
- Nature, 2012, v. 484, n. 7394, p. 318, doi. 10.1038/484318a
- By:
- Publication type:
- Article
Temporal dynamics and genetic control of transcription in the human prefrontal cortex.
- Published in:
- Nature, 2011, v. 478, n. 7370, p. 519, doi. 10.1038/nature10524
- By:
- Publication type:
- Article
EDGE: extraction and analysis of differential gene expression.
- Published in:
- Bioinformatics, 2006, v. 22, n. 11, p. 1412, doi. 10.1093/bioinformatics/btl149
- By:
- Publication type:
- Article
EDGE: extraction and analysis of differential gene expression.
- Published in:
- Bioinformatics, 2006, v. 22, n. 4, p. 507, doi. 10.1093/bioinformatics/btk005
- By:
- Publication type:
- Article
A direct approach to estimating false discovery rates conditional on covariates.
- Published in:
- PeerJ, 2018, p. 1, doi. 10.7717/peerj.6035
- By:
- Publication type:
- Article
Explanation of observational data engenders a causal belief about smoking and cancer.
- Published in:
- PeerJ, 2018, p. 1, doi. 10.7717/peerj.5597
- By:
- Publication type:
- Article
Developmental regulation of human cortex transcription and its clinical relevance at single base resolution.
- Published in:
- Nature Neuroscience, 2015, v. 18, n. 1, p. 154, doi. 10.1038/nn.3898
- By:
- Publication type:
- Article
ari: The Automated R Instructor.
- Published in:
- R Journal, 2020, v. 12, n. 1, p. 258, doi. 10.32614/rj-2020-023
- By:
- Publication type:
- Article
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1118-6
- By:
- Publication type:
- Article
Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis.
- Published in:
- PLoS Genetics, 2007, v. 3, n. 9, p. 1724, doi. 10.1371/journal.pgen.0030161
- By:
- Publication type:
- Article
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.
- Published in:
- International Journal of Epidemiology, 2012, v. 41, n. 1, p. 200, doi. 10.1093/ije/dyr238
- By:
- Publication type:
- Article
Addressing confounding artifacts in reconstruction of gene co-expression networks.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1700-9
- By:
- Publication type:
- Article
A simple and reproducible breast cancer prognostic test.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-336
- By:
- Publication type:
- Article
Dissecting Inflammatory Complications in Critically Injured Patients by Within-Patient Gene Expression Changes: A Longitudinal Clinical Genomics Study.
- Published in:
- PLoS Medicine, 2011, v. 8, n. 9, p. 1
- By:
- Publication type:
- Article
Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study.
- Published in:
- 2011
- By:
- Publication type:
- journal article
Rail-RNA: scalable analysis of RNA-seq splicing and coverage.
- Published in:
- Bioinformatics, 2017, v. 33, n. 24, p. 4033, doi. 10.1093/bioinformatics/btw575
- By:
- Publication type:
- Article
BatchQC: interactive software for evaluating sample and batch effects in genomic data.
- Published in:
- Bioinformatics, 2016, v. 32, n. 24, p. 3836, doi. 10.1093/bioinformatics/btw538
- By:
- Publication type:
- Article