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RNA regulons in Hox 5′ UTRs confer ribosome specificity to gene regulation.
- Published in:
- Nature, 2015, v. 517, n. 7532, p. 33, doi. 10.1038/nature14010
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- Article
Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping.
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- eLife, 2018, p. 1, doi. 10.7554/eLife.29602
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- Article
Consistent global structures of complex RNA states through multidimensional chemical mapping.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.07600
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- Article
Minimization of the E. coli ribosome, aided and optimized by community science.
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- Nucleic Acids Research, 2024, v. 52, n. 3, p. 1027, doi. 10.1093/nar/gkad1254
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- Article
Computationally-guided design and selection of high performing ribosomal active site mutants.
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- Nucleic Acids Research, 2022, v. 50, n. 22, p. 13143, doi. 10.1093/nar/gkac1036
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- Article
Correction to 'Theoretical basis for stabilizing messenger RNA through secondary structure design'.
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- Nucleic Acids Research, 2021, v. 49, n. 19, p. 11405, doi. 10.1093/nar/gkab911
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- Article
Theoretical basis for stabilizing messenger RNA through secondary structure design.
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- Nucleic Acids Research, 2021, v. 49, n. 18, p. 10604, doi. 10.1093/nar/gkab764
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- Article
De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures.
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- Nucleic Acids Research, 2021, v. 49, n. 6, p. 3092, doi. 10.1093/nar/gkab119
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- Article
Structure and ligand binding of the glutamine-II riboswitch.
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- Nucleic Acids Research, 2019, v. 47, n. 14, p. 7666, doi. 10.1093/nar/gkz539
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- Article
Updates to the RNA mapping database (RMDB), version 2.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D375, doi. 10.1093/nar/gkx873
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- Article
RNA-Redesign: a web server for fixed-backbone 3D design of RNA.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W498, doi. 10.1093/nar/gkv465
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- Article
Primerize: automated primer assembly for transcribing non-coding RNA domains.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W522, doi. 10.1093/nar/gkv538
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- Publication type:
- Article
HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis.
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- Nucleic Acids Research, 2013, v. 41, p. W492, doi. 10.1093/nar/gkt501
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- Publication type:
- Article
Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13494-7
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- Article
Primerize-2D: automated primer design for RNA multidimensional chemical mapping.
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- Bioinformatics, 2017, v. 33, n. 9, p. 1405, doi. 10.1093/bioinformatics/btw814
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- Article
Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles.
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- Bioinformatics, 2015, v. 31, n. 17, p. 2808, doi. 10.1093/bioinformatics/btv282
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- Article
RNA structure through multidimensional chemical mapping.
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- Quarterly Reviews of Biophysics, 2016, v. 49, p. 1, doi. 10.1017/S0033583516000020
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- Article
EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame.
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- PLoS Computational Biology, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pcbi.1007059
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- Article
An RNA Mapping DataBase for curating RNA structure mapping experiments.
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- Bioinformatics, 2012, v. 28, n. 22, p. 3006, doi. 10.1093/bioinformatics/bts554
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- Article
HiTRACE: high-throughput robust analysis for capillary electrophoresis.
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- Bioinformatics, 2011, v. 27, n. 13, p. 1798, doi. 10.1093/bioinformatics/btr277
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- Article
A robust peak detection method for RNA structure inference by high-throughput contact mapping.
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- Bioinformatics, 2009, v. 25, n. 9, p. 1137, doi. 10.1093/bioinformatics/btp110
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- Article
RiboDraw: semiautomated two-dimensional drawing of RNA tertiary structure diagrams.
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- NAR Genomics & Bioinformatics, 2021, v. 3, n. 4, p. 1, doi. 10.1093/nargab/lqab091
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- Article
Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22489-2
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- Article
Cover Image, Volume 91, Issue 12.
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- Proteins, 2023, v. 91, n. 12, p. C4, doi. 10.1002/prot.26640
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CASP15 cryo-EM protein and RNA targets: Refinement and analysis using experimental maps.
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- Proteins, 2023, v. 91, n. 12, p. 1935, doi. 10.1002/prot.26644
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- Article
New prediction categories in CASP15.
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- Proteins, 2023, v. 91, n. 12, p. 1550, doi. 10.1002/prot.26515
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RNA target highlights in CASP15: Evaluation of predicted models by structure providers.
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- Proteins, 2023, v. 91, n. 12, p. 1600, doi. 10.1002/prot.26550
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- Article
Assessment of three-dimensional RNA structure prediction in CASP15.
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- Proteins, 2023, v. 91, n. 12, p. 1747, doi. 10.1002/prot.26602
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- Article
Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10.
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- Proteins, 2014, v. 82, p. 26, doi. 10.1002/prot.24489
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- Article
Rosetta in CAPRI rounds 13-19.
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- Proteins, 2010, v. 78, n. 15, p. 3212, doi. 10.1002/prot.22784
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Structure prediction for CASP8 with all-atom refinement using Rosetta.
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- Proteins, 2009, v. 77, n. S9, p. 89, doi. 10.1002/prot.22540
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- Article
Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.
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- Proteins, 2007, v. 69, n. S8, p. 118, doi. 10.1002/prot.21636
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- Article
Atomic-Accuracy Prediction of Protein Loop Structures through an RNA-Inspired Ansatz.
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- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0074830
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- Article
Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design.
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- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0067051
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- Article
Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063906
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- Article
Four Small Puzzles That Rosetta Doesn't Solve.
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- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020044
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- Article
A Molecular Ruler for Measuring Quantitative Distance Distributions.
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- PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003229
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- Article
Structure determination of noncanonical RNA motifs guided by <sup>1</sup>H NMR chemical shifts.
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- Nature Methods, 2014, v. 11, n. 4, p. 413, doi. 10.1038/nmeth.2876
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- Article
Correcting pervasive errors in RNA crystallography through enumerative structure prediction.
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- Nature Methods, 2013, v. 10, n. 1, p. 74, doi. 10.1038/nmeth.2262
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- Article
Atomic accuracy in predicting and designing noncanonical RNA structure.
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- Nature Methods, 2010, v. 7, n. 4, p. 291, doi. 10.1038/nmeth.1433
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- Article
Community science designed ribosomes with beneficial phenotypes.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35827-3
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- Article
A two-dimensional mutate-and-map strategy for non-coding RNA structure.
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- Nature Chemistry, 2011, v. 3, n. 12, p. 954, doi. 10.1038/nchem.1176
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- Article
Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE).
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 259, doi. 10.1002/pro.3313
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- Article
High-resolution structure prediction and the crystallographic phase problem.
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- Nature, 2007, v. 450, n. 7167, p. 259, doi. 10.1038/nature06249
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- Article
Visualization of human telomerase holoenzyme by cryo‐EM.
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- FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.0I130
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- Article
RNA 3D structure prediction guided by independent folding of homologous sequences.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3120-y
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- Article
A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11585-z
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- Publication type:
- Article
Ribosome-induced RNA conformational changes in a viral 3′-UTR sense and regulate translation levels.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07542-x
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- Article
Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque.
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- PLoS Computational Biology, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003756
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- Article
Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004473
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- Article