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- Title
Altered transcriptional and chromatin responses to rhinovirus in bronchial epithelial cells from adults with asthma.
- Authors
Helling, Britney A.; Sobreira, Débora R.; Hansen, Grace T.; Sakabe, Noboru J.; Luo, Kaixuan; Billstrand, Christine; Laxman, Bharathi; Nicolae, Raluca I.; Nicolae, Dan L.; Bochkov, Yury A.; Gern, James E.; Nobrega, Marcelo A.; White, Steven R.; Ober, Carole
- Abstract
There is a life-long relationship between rhinovirus (RV) infection and the development and clinical manifestations of asthma. In this study we demonstrate that cultured primary bronchial epithelial cells from adults with asthma (n = 9) show different transcriptional and chromatin responses to RV infection compared to those without asthma (n = 9). Both the number and magnitude of transcriptional and chromatin responses to RV were muted in cells from asthma cases compared to controls. Pathway analysis of the transcriptionally responsive genes revealed enrichments of apoptotic pathways in controls but inflammatory pathways in asthma cases. Using promoter capture Hi-C we tethered regions of RV-responsive chromatin to RV-responsive genes and showed enrichment of these regions and genes at asthma GWAS loci. Taken together, our studies indicate a delayed or prolonged inflammatory state in cells from asthma cases and highlight genes that may contribute to genetic risk for asthma. Britney Helling et al. report that cultured bronchial cells from adults with asthma show different gene expression and chromatin accessibility patterns when exposed to rhinovirus than do cells from individuals without asthma. Their data suggest that rhinovirus infection leads to a delayed or elongated activation of inflammatory genes in individuals with asthma compared to those without asthma.
- Subjects
EPITHELIAL cells; ASTHMA; PHENOTYPES; MOLECULAR biology; CHROMATIN
- Publication
Communications Biology, 2020, Vol 3, Issue 1, p1
- ISSN
2399-3642
- Publication type
Article
- DOI
10.1038/s42003-020-01411-4