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Analysis of Huntington's Disease Modifiers Using the Hyperbolic Mapping of the Protein Interaction Network.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 10, p. 5853, doi. 10.3390/ijms23105853
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- Article
The Role of Low Complexity Regions in Protein Interaction Modes: An Illustration in Huntingtin.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 4, p. 1727, doi. 10.3390/ijms22041727
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- Article
Homorepeat variability within the human population.
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- NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae053
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- Article
CABRA: Cluster and Annotate Blast Results Algorithm.
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- BMC Research Notes, 2016, v. 9, p. 1, doi. 10.1186/s13104-016-2062-y
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- Article
sequence context in poly-alanine regions: structure, function and conservation.
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- Bioinformatics, 2022, v. 38, n. 21, p. 4851, doi. 10.1093/bioinformatics/btac610
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- Article
Efficient embedding of complex networks to hyperbolic space via their Laplacian.
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- Scientific Reports, 2016, p. 30108, doi. 10.1038/srep30108
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- Article
Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors.
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- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad065
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- Article
orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins.
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- PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0143906
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The features of polyglutamine regions depend on their evolutionary stability.
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- BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-01626-3
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- Article
The 18S ribosomal RNA m<sup>6</sup>A methyltransferase Mettl5 is required for normal walking behavior in Drosophila.
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- EMBO Reports, 2020, v. 21, n. 7, p. 1, doi. 10.15252/embr.201949443
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- Article
Evolutionary Study of Protein Short Tandem Repeats in Protein Families.
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- Biomolecules (2218-273X), 2023, v. 13, n. 7, p. 1116, doi. 10.3390/biom13071116
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- Article
Functional Tuning of Intrinsically Disordered Regions in Human Proteins by Composition Bias.
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- Biomolecules (2218-273X), 2022, v. 12, n. 10, p. N.PAG, doi. 10.3390/biom12101486
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- Article
Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered.
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- Biomolecules (2218-273X), 2022, v. 12, n. 8, p. 1098, doi. 10.3390/biom12081098
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- Article
Evolutionary Study of Disorder in Protein Sequences.
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- Biomolecules (2218-273X), 2020, v. 10, n. 10, p. 1413, doi. 10.3390/biom10101413
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- Article
CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats.
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- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa088
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- Article
Assessing the low complexity of protein sequences via the low complexity triangle.
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- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0239154
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- Article
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis.
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- PLoS Computational Biology, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pcbi.1009105
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- Article
An Optimal and Complete Algorithm for Automatic Web Service Composition.
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- International Journal of Web Services Research, 2012, v. 9, n. 2, p. 1, doi. 10.4018/jwsr.2012040101
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- Article
Molecular causality in the advent of foundation models.
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- Molecular Systems Biology, 2024, v. 20, n. 8, p. 848, doi. 10.1038/s44320-024-00041-w
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- Article
Disentangling the complexity of low complexity proteins.
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- Briefings in Bioinformatics, 2020, v. 21, n. 2, p. 458, doi. 10.1093/bib/bbz007
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- Article
Toward completion of the Earth's proteome: an update a decade later.
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- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 463, doi. 10.1093/bib/bbx127
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- Article
Between Interactions and Aggregates: The PolyQ Balance.
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- Genome Biology & Evolution, 2021, v. 13, n. 11, p. 1, doi. 10.1093/gbe/evab246
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- Article
Glutamine Codon Usage and polyQ Evolution in Primates Depend on the Q Stretch Length.
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- Genome Biology & Evolution, 2018, v. 10, n. 3, p. 816, doi. 10.1093/gbe/evy046
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- Article
MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments.
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- Evolutionary Bioinformatics, 2020, v. 16, p. 1, doi. 10.1177/1176934320916199
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- Article
MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments.
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- Evolutionary Bioinformatics, 2020, p. 1, doi. 10.1177/1176934320916199
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- Article
DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks.
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- PLoS Computational Biology, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pcbi.1008730
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- Article
The Protein Structure Context of PolyQ Regions.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0170801
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- Article
Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family.
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- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169750
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- Article
Genome scale metabolic network modelling for metabolic profile predictions.
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- PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011381
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- Article
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.
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- Nucleic Acids Research, 2020, v. 48, n. W1, p. W77, doi. 10.1093/nar/gkaa339
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- Article
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.
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- Nucleic Acids Research, 2019, v. 47, n. 21, p. 10994, doi. 10.1093/nar/gkz841
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- Article
Automated selection of homologs to track the evolutionary history of proteins.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2457-y
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- Article
Annotation and Analysis of 3902 Odorant Receptor Protein Sequences from 21 Insect Species Provide Insights into the Evolution of Odorant Receptor Gene Families in Solitary and Social Insects.
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- Genes, 2022, v. 13, n. 5, p. 919, doi. 10.3390/genes13050919
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- Article
PolyX2: Fast Detection of Homorepeats in Large Protein Datasets.
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- Genes, 2022, v. 13, n. 5, p. 758, doi. 10.3390/genes13050758
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- Article
The Conservation of Low Complexity Regions in Bacterial Proteins Depends on the Pathogenicity of the Strain and Subcellular Location of the Protein.
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- Genes, 2021, v. 12, n. 3, p. 451, doi. 10.3390/genes12030451
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- Article
Proteome-wide comparison between the amino acid composition of domains and linkers.
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- BMC Research Notes, 2018, v. 11, p. 1, doi. 10.1186/s13104-018-3221-0
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- Article
Context characterization of amino acid homorepeats using evolution, position, and order.
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- Proteins, 2017, v. 85, n. 4, p. 709, doi. 10.1002/prot.25250
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- Article
Structured Tandem Repeats in Protein Interactions.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 5, p. 2994, doi. 10.3390/ijms25052994
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- Article
Avoided motifs: short amino acid strings missing from protein datasets.
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- Biological Chemistry, 2021, v. 402, n. 8, p. 945, doi. 10.1515/hsz-2020-0383
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- Article
Traitpedia: a collaborative effort to gather species traits.
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- Bioinformatics, 2019, v. 35, n. 6, p. 1079, doi. 10.1093/bioinformatics/bty743
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- Article
dAPE: a web server to detect homorepeats and follow their evolution.
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- Bioinformatics, 2017, v. 33, n. 8, p. 1221, doi. 10.1093/bioinformatics/btw790
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- Article