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- Title
Transcriptome of Russet Norkotah and its clonal selection, TXNS278.
- Authors
Levy, Julien; Tamborindeguy, Cecilia; Athrey, Giridhar; Scheuring, Douglas C.; Koym, Jeffrey W.; Miller Jr., J. Creighton
- Abstract
Objectives: Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description: In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season.
- Subjects
POTATO genetics; POTATOES; CULTIVARS; TETRAPLOIDY; RNA sequencing; GENE expression in plants; PLANT chromosomes
- Publication
BMC Research Notes, 2018, Vol 11, p1
- ISSN
1756-0500
- Publication type
Article
- DOI
10.1186/s13104-018-3254-4