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Antiviral potential of extracts from Myriogloea major against herpes simplex type 1, 2 and bovine coronavirus.
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- Phycological Research, 2024, v. 72, n. 4, p. 249, doi. 10.1111/pre.12564
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Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua.
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- Biotechnology Letters, 2012, v. 34, n. 4, p. 737, doi. 10.1007/s10529-011-0808-0
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- Article
Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress‐dependent mRNAs.
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- EMBO Reports, 2019, v. 20, n. 12, p. N.PAG, doi. 10.15252/embr.201947964
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- Article
Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines.
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- Genetics, 2022, v. 221, n. 4, p. 1, doi. 10.1093/genetics/iyac080
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Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway.
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- Histopathology, 2019, v. 75, n. 4, p. 496, doi. 10.1111/his.13889
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Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach.
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- Frontiers in Genetics, 2018, p. N.PAG, doi. 10.3389/fgene.2018.00578
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Lycopene overproduction and in situ extraction in organic-aqueous culture systems using a metabolically engineered Escherichia coli.
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- AMB Express, 2015, v. 5, n. 1, p. 1, doi. 10.1186/s13568-015-0150-3
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- Article
Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 9, p. 2923, doi. 10.1534/g3.118.200373
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Global Methylome Scores Correlate with Histological Subtypes of Colorectal Carcinoma and Show Different Associations with Common Clinical and Molecular Features.
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- Cancers, 2021, v. 13, n. 20, p. 5165, doi. 10.3390/cancers13205165
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New roles for AP-1/JUNB in cell cycle control and tumorigenic cell invasion via regulation of cyclin E1 and TGF-β2.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02800-0
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- Article
Enhanced protein isoform characterization through long-read proteogenomics.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02624-y
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- Article
Enhanced protein isoform characterization through long-read proteogenomics.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02624-y
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Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis.
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- Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1596, doi. 10.1093/gbe/evy116
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- Article
Intervenciones de enfermería psicoeducativas presenciales y online, para el manejo de la ansiedad: revisión integradora de la literatura.
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- Enfermería Global, 2022, v. 21, n. 4, p. 531, doi. 10.6018/eglobal.503401
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- Article
Genome-wide changes in histone H3 lysine 27 trimethylation associated with bud dormancy release in peach.
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- Tree Genetics & Genomes, 2015, v. 11, n. 3, p. 1, doi. 10.1007/s11295-015-0869-7
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- Article
RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1853-1
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Comparative transcriptomics reveals striking similarities between the bovine and feline isolates of Tritrichomonas foetus: consequences for in silico drug-target identification.
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- BMC Genomics, 2014, v. 15, n. 1, p. 955, doi. 10.1186/1471-2164-15-955
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- Article
Relationship between genome and epigenome - challenges and requirements for future research.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-487
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- Article
Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics.
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- BMC Genomics, 2012, v. 13, n. 1, p. 267, doi. 10.1186/1471-2164-13-267
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- Article
Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing.
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- BMC Genomics, 2011, v. 12, n. 1, p. 259, doi. 10.1186/1471-2164-12-259
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Palmitate impairs circadian transcriptomics in muscle cells through histone modification of enhancers.
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- Life Science Alliance, 2023, v. 6, n. 1, p. 1, doi. 10.26508/lsa.202201598
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Transcriptional profiling of the mutualistic bacterium Vibrio fischeri and an hfq mutant under modeled microgravity.
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- NPJ Microgravity, 2018, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41526-018-0060-1
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- Article
A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6.
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- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0412-z
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Making multi-omics data accessible to researchers.
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- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0258-4
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Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD.
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- Nucleic Acids Research, 2024, v. 52, n. 5, p. e28, doi. 10.1093/nar/gkae056
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- Article
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases.
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- Nucleic Acids Research, 2022, v. 50, n. W1, p. W551, doi. 10.1093/nar/gkac352
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- Article
PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data.
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- Nucleic Acids Research, 2018, v. 46, n. W1, p. W503, doi. 10.1093/nar/gky466
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- Article
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences.
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- Nucleic Acids Research, 2016, v. 44, n. W1, p. W176, doi. 10.1093/nar/gkw443
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- Article
Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package.
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- Nucleic Acids Research, 2015, v. 43, n. 21, p. 1, doi. 10.1093/nar/gkv711
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- Article
Harmonization of quality metrics and power calculation in multi-omic studies.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-16937-8
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- Article
Harmonization of quality metrics and power calculation in multi-omic studies.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16937-8
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- Article
Two histologically colorectal carcinomas subsets from the serrated pathway show different methylome signatures and diagnostic biomarkers.
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- Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0571-3
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- Article
Making sense of big data in health research: Towards an EU action plan.
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- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0323-y
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Understanding disease mechanisms with models of signaling pathway activities.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0121-3
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- Article
STATegra EMS: an Experiment Management System for complex next-generation omics experiments.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S9
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Pathway network inference from gene expression data.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S7
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The common ground of genomics and systems biology.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S1
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Data integration in the era of omics: current and future challenges.
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- BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-I1
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- Article
acorde unravels functionally interpretable networks of isoform co-usage from single cell data.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29497-w
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- Article
acorde unravels functionally interpretable networks of isoform co-usage from single cell data.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29497-w
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- Article
Methylome profiling reveals functions and genes which are differentially methylated in serrated compared to conventional colorectal carcinoma.
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- Clinical Epigenetics, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13148-015-0128-7
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- Article
A survey of best practices for RNA-seq data analysis.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0881-8
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- Article
Modeling Human Endometrial Decidualization from the Interaction between Proteome and Secretome. .
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- Journal of Clinical Endocrinology & Metabolism, 2011, v. 96, n. 3, p. 706, doi. 10.1210/jc.2010-1825
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- Article
scMaSigPro: differential expression analysis along single-cell trajectories.
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- Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae443
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ECCB2022: the 21st European Conference on Computational Biology.
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- Bioinformatics, 2022, v. 38, p. ii1, doi. 10.1093/bioinformatics/btac560
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- Article
MultiBaC: an R package to remove batch effects in multi-omic experiments.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2657, doi. 10.1093/bioinformatics/btac132
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- Article
MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants.
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- Bioinformatics, 2020, v. 36, p. i618, doi. 10.1093/bioinformatics/btaa889
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- Article
Padhoc: a computational pipeline for pathway reconstruction on the fly.
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- Bioinformatics, 2020, v. 36, p. i795, doi. 10.1093/bioinformatics/btaa811
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GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.
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- Bioinformatics, 2018, v. 34, n. 9, p. 1547, doi. 10.1093/bioinformatics/btx815
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Identification and visualization of differential isoform expression in RNA-seq time series.
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- Bioinformatics, 2018, v. 34, n. 3, p. 524, doi. 10.1093/bioinformatics/btx578
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