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A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.
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- Proteins, 2006, v. 65, n. 1, p. 32, doi. 10.1002/prot.21087
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Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites.
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- Proteins, 2006, v. 65, n. 1, p. 111, doi. 10.1002/prot.21101
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Protein-ligand docking: Current status and future challenges.
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- Proteins, 2006, v. 65, n. 1, p. 15, doi. 10.1002/prot.21082
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Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations.
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- Proteins, 2006, v. 65, n. 1, p. 164, doi. 10.1002/prot.21060
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Exploring the relationship between funneled energy landscapes and two-state protein folding.
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- Proteins, 2006, v. 65, n. 1, p. 153, doi. 10.1002/prot.21080
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Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 Å resolution.
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- Proteins, 2006, v. 65, n. 1, p. 249, doi. 10.1002/prot.21024
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Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing.
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- Proteins, 2006, v. 65, n. 1, p. 203, doi. 10.1002/prot.21091
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Better prediction of the location of α-turns in proteins with support vector machine.
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- Proteins, 2006, v. 65, n. 1, p. 49, doi. 10.1002/prot.21062
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Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis.
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- Proteins, 2006, v. 65, n. 1, p. 255, doi. 10.1002/prot.21073
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- Article
Characterization of the residual structure in the unfolded state of the Δ131Δ fragment of staphylococcal nuclease.
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- Proteins, 2006, v. 65, n. 1, p. 145, doi. 10.1002/prot.21077
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Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity.
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- Proteins, 2006, v. 65, n. 1, p. 231, doi. 10.1002/prot.21088
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Multi-template approach to modeling engineered disulfide bonds.
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- Proteins, 2006, v. 65, n. 1, p. 192, doi. 10.1002/prot.21059
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Crystal structures of the PLP- and PMP-bound forms of BtrR, a dual functional aminotransferase involved in butirosin biosynthesis.
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- Proteins, 2006, v. 65, n. 1, p. 220, doi. 10.1002/prot.21076
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- Article
Starch-synthase III family encodes a tandem of three starch-binding domains.
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- Proteins, 2006, v. 65, n. 1, p. 27, doi. 10.1002/prot.21007
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Computational exploration of the activated pathways associated with DNA damage response in breast cancer.
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- Proteins, 2006, v. 65, n. 1, p. 103, doi. 10.1002/prot.21064
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- Article
Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 Å resolution reveals a new fold.
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- Proteins, 2006, v. 65, n. 1, p. 243, doi. 10.1002/prot.21058
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- Article
Predicting transmembrane β-barrels and interstrand residue interactions from sequence.
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- Proteins, 2006, v. 65, n. 1, p. 61, doi. 10.1002/prot.21046
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Electrostatic contribution to the binding stability of protein-protein complexes.
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- Proteins, 2006, v. 65, n. 1, p. 87, doi. 10.1002/prot.21070
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A practical overview of protein disorder prediction methods.
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- Proteins, 2006, v. 65, n. 1, p. 1, doi. 10.1002/prot.21075
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The crystal structure of XC1739: A putative multiple antibiotic-resistance repressor (MarR) from Xanthomonas campestris at 1.8 Å resolution.
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- Proteins, 2006, v. 65, n. 1, p. 239, doi. 10.1002/prot.21017
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Predicting G-protein coupled receptors-G-protein coupling specificity based on autocross-covariance transform.
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- Proteins, 2006, v. 65, n. 1, p. 55, doi. 10.1002/prot.21097
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Comparison of protein active site structures for functional annotation of proteins and drug design.
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- Proteins, 2006, v. 65, n. 1, p. 124, doi. 10.1002/prot.21092
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Structures of soluble amyloid oligomers from computer simulations.
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- Proteins, 2006, v. 65, n. 1, p. 180, doi. 10.1002/prot.21100
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Protein under pressure: Molecular dynamics simulation of the arc repressor.
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- Proteins, 2006, v. 65, n. 1, p. 136, doi. 10.1002/prot.21034
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Exploring the environmental preference of weak interactions in (α/β)<sub>8</sub> barrel proteins.
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- Proteins, 2006, v. 65, n. 1, p. 75, doi. 10.1002/prot.21067
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Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.
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- Proteins, 2006, v. 65, n. 1, p. 40, doi. 10.1002/prot.21078
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- Article