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MetDecode: methylation-based deconvolution of cell-free DNA for noninvasive multi-cancer typing.
- Published in:
- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae522
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- Article
Two‐level preconditioning for Ridge Regression.
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- Numerical Linear Algebra with Applications, 2021, v. 28, n. 4, p. 1, doi. 10.1002/nla.2371
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- Article
Biologically meaningful genome interpretation models to address data underdetermination for the leaf and seed ionome prediction in Arabidopsis thaliana.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63855-6
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- Article
Proteome analysis demonstrates profound alterations in human dendritic cell nature by TX527, an analogue of vitamin D.
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- Proteomics, 2009, v. 9, n. 14, p. 3752, doi. 10.1002/pmic.200800848
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- Article
Computational tools for prioritizing candidate genes: boosting disease gene discovery.
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- Nature Reviews Genetics, 2012, v. 13, n. 8, p. 523, doi. 10.1038/nrg3253
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- Article
Microarray screening for target genes of the proto-oncogene PLAG1.
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- Oncogene, 2004, v. 23, n. 1, p. 179, doi. 10.1038/sj.onc.1207013
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- Publication type:
- Article
From genotype to phenotype in Arabidopsis thaliana: in-silico genome interpretation predicts 288 phenotypes from sequencing data.
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- Nucleic Acids Research, 2022, v. 50, n. 3, p. e16, doi. 10.1093/nar/gkab1099
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- Article
Understanding mutational effects in digenic diseases.
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- Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx557
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- Article
Candidate gene prioritization with Endeavour.
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- Nucleic Acids Research, 2016, v. 44, n. W1, p. W117, doi. 10.1093/nar/gkw365
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- Article
Beegle: from literature mining to disease-gene discovery.
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- Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv905
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- Article
Galahad: a web server for drug effect analysis from gene expression.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W208, doi. 10.1093/nar/gkv436
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- Article
Concordance of gene expression in human protein complexes reveals tissue specificity and pathology.
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- Nucleic Acids Research, 2013, v. 41, n. 18, p. e171
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- Article
Single-cell paired-end genome sequencing reveals structural variation per cell cycle.
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- Nucleic Acids Research, 2013, v. 41, n. 12, p. 6119, doi. 10.1093/nar/gkt345
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- Publication type:
- Article
Meander: visually exploring the structural variome using space-filling curves.
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- Nucleic Acids Research, 2013, v. 41, n. 11, p. e118, doi. 10.1093/nar/gkt254
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- Publication type:
- Article
Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains.
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- Nucleic Acids Research, 2013, v. 41, n. 6, p. e66, doi. 10.1093/nar/gks1352
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- Publication type:
- Article
Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34959-7
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- Publication type:
- Article
ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34547-9
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- Publication type:
- Article
Linking drug target and pathway activation for effective therapy using multi-task learning.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. N.PAG, doi. 10.1038/s41598-018-25947-y
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- Publication type:
- Article
COVID-19 in people with multiple sclerosis: A global data sharing initiative.
- Published in:
- Multiple Sclerosis Journal, 2020, v. 26, n. 10, p. 1157, doi. 10.1177/1352458520941485
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- Publication type:
- Article
PyUUL provides an interface between biological structures and deep learning algorithms.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28327-3
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- Publication type:
- Article
Protein-induced changes during the maturation process of human dendritic cells: A 2-D DIGE approach.
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- Proteomics - Clinical Applications, 2008, v. 2, n. 9, p. 1349, doi. 10.1002/prca.200800110
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- Publication type:
- Article
Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development.
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- Clinical Epigenetics, 2016, v. 8, p. 1, doi. 10.1186/s13148-016-0272-8
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- Publication type:
- Article
The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models.
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- Genome Biology, 2013, v. 14, n. 10, p. 3, doi. 10.1186/gb-2013-14-10-r113
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- Publication type:
- Article
GENESTAT: an information portal for design and analysis of genetic association studies.
- Published in:
- European Journal of Human Genetics, 2009, v. 17, n. 4, p. 533, doi. 10.1038/ejhg.2008.216
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- Publication type:
- Article
Nonlinear data fusion over Entity–Relation graphs for Drug–Target Interaction prediction.
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- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad348
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- Publication type:
- Article
Fast and accurate inference of gene regulatory networks through robust precision matrix estimation.
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- Bioinformatics, 2022, v. 38, n. 10, p. 2802, doi. 10.1093/bioinformatics/btac178
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- Publication type:
- Article
In silico prediction of in vitro protein liquid–liquid phase separation experiments outcomes with multi-head neural attention.
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- Bioinformatics, 2021, v. 37, n. 20, p. 3473, doi. 10.1093/bioinformatics/btab350
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- Publication type:
- Article
A novel method for data fusion over entity-relation graphs and its application to protein–protein interaction prediction.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2275, doi. 10.1093/bioinformatics/btab092
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- Publication type:
- Article
Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates.
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- Bioinformatics, 2019, v. 35, n. 22, p. 4617, doi. 10.1093/bioinformatics/btz274
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- Article
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.
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- Bioinformatics, 2019, v. 35, n. 12, p. 2159, doi. 10.1093/bioinformatics/bty916
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- Article
Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping.
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- Bioinformatics, 2018, v. 34, n. 18, p. 3118, doi. 10.1093/bioinformatics/bty309
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- Article
ECCB 2018: The 17th European Conference on Computational Biology.
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- 2018
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- Publication type:
- Proceeding
pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2254, doi. 10.1093/bioinformatics/bty079
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- Article
Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information.
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- Bioinformatics, 2018, v. 34, n. 13, p. i447, doi. 10.1093/bioinformatics/bty289
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- Publication type:
- Article
Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53324-w
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- Publication type:
- Article
Author Correction: Linking drug target and pathway activation for effective therapy using multi-task learning.
- Published in:
- 2019
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- Publication type:
- Correction Notice
Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor.
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- PLoS ONE, 2020, v. 15, n. 5, p. 1, doi. 10.1371/journal.pone.0233089
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- Article
ECCB 2014: The 13th European Conference on Computational Biology.
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- 2014
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- Publication type:
- Proceeding
Protein fold recognition using geometric kernel data fusion.
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- Bioinformatics, 2014, v. 30, n. 13, p. 1850, doi. 10.1093/bioinformatics/btu118
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- Article
An unbiased evaluation of gene prioritization tools.
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- Bioinformatics, 2012, v. 28, n. 23, p. 3081
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- Publication type:
- Article
ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings.
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- Bioinformatics, 2012, v. 28, n. 18, p. i569, doi. 10.1093/bioinformatics/bts391
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- Publication type:
- Article
Optimized data fusion for K-means Laplacian clustering.
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- Bioinformatics, 2011, v. 27, n. 1, p. 118, doi. 10.1093/bioinformatics/btq569
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- Publication type:
- Article
Yves Moreau and Jaap Heringa, on behalf of the ECCB10 organizing and steering committees.
- Published in:
- 2010
- By:
- Publication type:
- Proceeding
Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases.
- Published in:
- Bioinformatics, 2010, v. 26, n. 17, p. 2210, doi. 10.1093/bioinformatics/btq348
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- Publication type:
- Article
Large-scale benchmark of Endeavour using MetaCore maps.
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- Bioinformatics, 2010, v. 26, n. 15, p. 1922, doi. 10.1093/bioinformatics/btq307
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- Publication type:
- Article
Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.
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- Bioinformatics, 2008, v. 24, n. 16, p. i119, doi. 10.1093/bioinformatics/btn291
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- Publication type:
- Article
Query-driven module discovery in microarray data.
- Published in:
- Bioinformatics, 2007, v. 23, n. 19, p. 2573, doi. 10.1093/bioinformatics/btm387
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- Publication type:
- Article
Kernel-based data fusion for gene prioritization.
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- Bioinformatics, 2007, v. 23, n. 13, p. i125, doi. 10.1093/bioinformatics/btm187
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- Publication type:
- Article
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
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- Bioinformatics, 2005, v. 21, n. 16, p. 3439, doi. 10.1093/bioinformatics/bti525
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- Article
Importing MAGE-ML format microarray data into BioConductor.
- Published in:
- Bioinformatics, 2004, v. 20, n. 18, p. 3641, doi. 10.1093/bioinformatics/bth396
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- Publication type:
- Article