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Energy Landscape Reveals the Underlying Mechanism of Cancer‐Adipose Conversion in Gene Network Models.
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- Advanced Science, 2024, v. 11, n. 41, p. 1, doi. 10.1002/advs.202404854
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TadA reprogramming to generate potent miniature base editors with high precision.
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- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-36004-2
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- Article
TadA orthologs enable both cytosine and adenine editing of base editors.
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- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-36003-3
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- Article
The drug cocktail network.
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- BMC Systems Biology, 2012, v. 6, n. Suppl 1, p. 1, doi. 10.1186/1752-0509-6-S1-S5
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A systems biology approach to identify effective cocktail drugs.
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- BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S7
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FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures.
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- BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S12
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- Article
Host DNA contents in fecal metagenomics as a biomarker for intestinal diseases and effective treatment.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6749-z
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- Article
A survey on biomarker identification based on molecular networks.
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- Quantitative Biology, 2016, v. 4, n. 4, p. 310, doi. 10.1007/s40484-016-0084-z
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- Article
A Survey on the Computational Approaches to Identify Drug Targets in the Postgenomic Era.
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- BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/239654
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- Article
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D693, doi. 10.1093/nar/gky999
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- Article
MVP: a microbe--phage interaction database.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D700, doi. 10.1093/nar/gkx1124
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CSTEA: a webserver for the Cell State Transition Expression Atlas.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W103, doi. 10.1093/nar/gkx402
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- Article
OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D940, doi. 10.1093/nar/gkw1013
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- Article
Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks.
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- Nucleic Acids Research, 2015, v. 43, n. 5, p. 1, doi. 10.1093/nar/gku1315
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- Article
Uncovering signal transduction networks from high-throughput data by integer linear programming.
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- Nucleic Acids Research, 2008, v. 36, n. 9, p. e48, doi. 10.1093/nar/gkn145
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- Article
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29843-y
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- Article
A global overview of genetically interpretable multimorbidities among common diseases in the UK Biobank.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00927-6
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- Article
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
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- Bioinformatics, 2023, v. 39, p. i21, doi. 10.1093/bioinformatics/btad209
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- Article
PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protein interaction information.
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- Bioinformatics, 2021, v. 37, n. 24, p. 4668, doi. 10.1093/bioinformatics/btab551
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- Article
MAT2: manifold alignment of single-cell transcriptomes with cell triplets.
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- Bioinformatics, 2021, v. 37, n. 19, p. 3263, doi. 10.1093/bioinformatics/btab250
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- Article
Guest Editorial.
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- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 105, doi. 10.1049/iet-syb.2015.0057
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- Article
Understanding the aristolochic acid toxicities in rat kidneys with regulatory networks.
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- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 141, doi. 10.1049/iet-syb.2014.0057
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- Article
Understanding the aristolochic acid toxicities in rat kidneys with regulatory networks.
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- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 141, doi. 10.1049/iet-syb.2014.0057
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- Publication type:
- Article
Guest Editorial.
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- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 105, doi. 10.1049/iet-syb.2015.0057
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- Article
Part 2: Network construction and mining for systems biology.
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- IET Systems Biology (Wiley-Blackwell), 2014, v. 8, n. 3, p. 75, doi. 10.1049/iet-syb.2014.0014
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Part 1: Network biology in translational bioinformatics and systems biology.
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- IET Systems Biology (Wiley-Blackwell), 2014, v. 8, n. 2, p. 23, doi. 10.1049/iet-syb.2014.0005
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GEAR: A database of Genomic Elements Associated with drug Resistance.
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- Scientific Reports, 2017, p. 44085, doi. 10.1038/srep44085
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Differential network analysis from cross-platform gene expression data.
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- Scientific Reports, 2016, p. 34112, doi. 10.1038/srep34112
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The exploration of network motifs as potential drug targets from post-translational regulatory networks.
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- Scientific Reports, 2016, p. 20558, doi. 10.1038/srep20558
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- Article
Prioritizing genes associated with brain disorders by leveraging enhancer-promoter interactions in diverse neural cells and tissues.
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- Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01210-6
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- Article
HISP: a hybrid intelligent approach for identifying directed signaling pathways.
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- Journal of Molecular Cell Biology, 2017, v. 9, n. 6, p. 453, doi. 10.1093/jmcb/mjx054
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- Article
Prediction of <i>S</i>-Glutathionylation Sites Based on Protein Sequences.
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- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055512
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FunSAV: Predicting the Functional Effect of Single Amino Acid Variants Using a Two-Stage Random Forest Model.
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- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043847
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- Article
A Network Approach to Predict Pathogenic Genes for Fusarium graminearum.
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- PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013021
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- Article
Common and disorder-specific cortical thickness alterations in internalizing, externalizing and thought disorders during early adolescence: an Adolescent Brain and Cognitive Development study.
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- Journal of Psychiatry & Neuroscience, 2023, v. 48, n. 5, p. E345, doi. 10.1503/jpn.220202
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A discriminative approach for identifying domain-domain interactions from protein-protein interactions.
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- Proteins, 2010, v. 78, n. 5, p. 1243, doi. 10.1002/prot.22643
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Protein domain annotation with integration of heterogeneous information sources.
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- Proteins, 2008, v. 72, n. 1, p. 461, doi. 10.1002/prot.21943
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Protein classification with imbalanced data.
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- Proteins, 2008, v. 70, n. 4, p. 1125, doi. 10.1002/prot.21870
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Predicting protein-protein interactions from protein sequences using meta predictor.
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- Amino Acids, 2010, v. 39, n. 5, p. 1595, doi. 10.1007/s00726-010-0588-1
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- Article
Protein function prediction with high-throughput data.
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- Amino Acids, 2008, v. 35, n. 3, p. 517, doi. 10.1007/s00726-008-0077-y
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- Article
eFG: an electronic resource for Fusarium graminearum.
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- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat042
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- Article
Involvement of Reactive Oxygen Species in the Hepatorenal Toxicity of Actinomycin V In Vitro and In Vivo.
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- Marine Drugs, 2020, v. 18, n. 8, p. 428, doi. 10.3390/md18080428
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Cellular transcriptional alterations of peripheral blood in Alzheimer's disease.
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- BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02472-4
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- Article
Exploring drug combinations in genetic interaction network.
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- BMC Bioinformatics, 2012, v. 13, n. Supplment 7, p. 1, doi. 10.1186/1471-2105-13-S7-S7
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- Article
Identifying dysregulated pathways in cancers from pathway interaction networks.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 126, doi. 10.1186/1471-2105-13-126
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- Article
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.
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- BMC Bioinformatics, 2010, v. 11, p. 174, doi. 10.1186/1471-2105-11-174
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- Article
Gene function prediction using labeled and unlabeled data.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-57
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- Article
Nanoengineering of CoFe-LDH@Ni(OH)<sub>2</sub> for supercapacitor and water splitting applications.
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- Journal of Materials Science, 2024, v. 59, n. 31, p. 14295, doi. 10.1007/s10853-024-10077-w
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- Article
Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing.
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- Advanced Science, 2024, v. 11, n. 13, p. 1, doi. 10.1002/advs.202305818
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- Article
Long‐Read Sequencing Reveals Extensive DNA Methylations in Human Gut Phagenome Contributed by Prevalently Phage‐Encoded Methyltransferases.
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- Advanced Science, 2023, v. 10, n. 25, p. 1, doi. 10.1002/advs.202302159
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- Article