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- Title
A chromosome-level genome assembly of the forestry pest Coronaproctus castanopsis.
- Authors
Huang, Yi-Xin; Zhu, Xiu-Shuang; Chen, Xiao-Nan; Zheng, Xin-Yi; Su, Bao-Shan; Shi, Xiao-Yu; Wang, Xu; Wu, San-An; Hu, Hao-Yuan; Yu, Jian-Ping; Zhang, Yan-Zhou; Zhu, Chao-Dong
- Abstract
As an important forestry pest, Coronaproctus castanopsis (Monophlebidae) has caused serious damage to the globally valuable Gutianshan ecosystem, China. In this study, we assembled the first chromosome-level genome of the female specimen of C. castanopsis by merging BGI reads, HiFi long reads and Hi-C data. The assembled genome size is 700.81 Mb, with a scaffold N50 size of 273.84 Mb and a contig N50 size of 12.37 Mb. Hi-C scaffolding assigned 98.32% (689.03 Mb) of C. Castanopsis genome to three chromosomes. The BUSCO analysis (n = 1,367) showed a completeness of 91.2%, comprising 89.2% of single-copy BUSCOs and 2.0% of multicopy BUSCOs. The mapping ratio of BGI, second-generation RNA, third-generation RNA and HiFi reads are 97.84%, 96.15%, 97.96%, and 99.33%, respectively. We also identified 64.97% (455.3 Mb) repetitive elements, 1,373 non-coding RNAs and 10,542 protein-coding genes. This study assembled a high-quality genome of C. castanopsis, which accumulated valuable molecular data for scale insects.
- Subjects
CHINA; GENOME size; SCALE insects; FORESTS &; forestry; NON-coding RNA; CHROMOSOMES; PESTS
- Publication
Scientific Data, 2024, Vol 11, p1
- ISSN
2052-4463
- Publication type
Article
- DOI
10.1038/s41597-024-03016-6