Found: 72
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HIPI: Spatially resolved multiplexed protein expression inferred from H&E WSIs.
- Published in:
- PLoS Computational Biology, 2024, v. 20, n. 9, p. 1, doi. 10.1371/journal.pcbi.1012501
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- Publication type:
- Article
Analysis of expression patterns: The scope of the problem, the problem of scope.
- Published in:
- Disease Markers, 2001, v. 17, n. 2, p. 59, doi. 10.1155/2001/728649
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- Publication type:
- Article
Efficient DNA-based data storage using shortmer combinatorial encoding.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-58386-z
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- Publication type:
- Article
A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3'-untranslated regions.
- Published in:
- Silence, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1758-907X-1-17
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- Publication type:
- Article
A Cyclic Permutation Approach to Removing Spatial Dependency between Clustered Gene Ontology Terms.
- Published in:
- Biology (2079-7737), 2024, v. 13, n. 3, p. 175, doi. 10.3390/biology13030175
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- Publication type:
- Article
Quantifying allele-specific CRISPR editing activity with CRISPECTOR2.0.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 16, p. e78, doi. 10.1093/nar/gkae651
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- Publication type:
- Article
SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W221, doi. 10.1093/nar/gky453
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- Publication type:
- Article
RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W507, doi. 10.1093/nar/gkv435
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- Publication type:
- Article
DRIMust: a web server for discovering rank imbalanced motifs using suffix trees.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. W174, doi. 10.1093/nar/gkt407
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- Publication type:
- Article
Exploring multisite heterogeneity of human basal cell carcinoma proteome and transcriptome.
- Published in:
- PLoS ONE, 2023, v. 18, n. 11, p. 1, doi. 10.1371/journal.pone.0293744
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- Publication type:
- Article
Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs.
- Published in:
- Algorithms for Molecular Biology, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1748-7188-9-11
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- Publication type:
- Article
miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pcbi.1008608
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- Publication type:
- Article
LIMT is a novel metastasis inhibiting lnc RNA suppressed by EGF and downregulated in aggressive breast cancer.
- Published in:
- EMBO Molecular Medicine, 2016, v. 8, n. 9, p. 1052, doi. 10.15252/emmm.201606198
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- Publication type:
- Article
Electroporation-based proteome sampling ex vivo enables the detection of brain melanoma protein signatures in a location proximate to visible tumor margins.
- Published in:
- PLoS ONE, 2022, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0265866
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- Publication type:
- Article
Discovering Motifs in Ranked Lists of DNA Sequences.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 3, p. 0508, doi. 10.1371/journal.pcbi.0030039
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- Publication type:
- Article
On the stability of log-rank test under labeling errors.
- Published in:
- Bioinformatics, 2021, v. 37, n. 23, p. 4451, doi. 10.1093/bioinformatics/btab495
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- Publication type:
- Article
Erratum to: Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging.
- Published in:
- Bioinformatics, 2021, v. 37, n. 22, p. 4296, doi. 10.1093/bioinformatics/btab692
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- Publication type:
- Article
On the stability of log-rank test under labeling errors.
- Published in:
- Bioinformatics, 2021, v. 37, n. 22, p. 4297, doi. 10.1093/bioinformatics/btab693
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- Publication type:
- Article
Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging.
- Published in:
- Bioinformatics, 2021, v. 37, n. 21, p. 3796, doi. 10.1093/bioinformatics/btab569
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- Publication type:
- Article
SOLQC: Synthetic Oligo Library Quality Control tool.
- Published in:
- Bioinformatics, 2021, v. 37, n. 5, p. 720, doi. 10.1093/bioinformatics/btaa740
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- Publication type:
- Article
Mutual enrichment in aggregated ranked lists with applications to gene expression regulation.
- Published in:
- Bioinformatics, 2016, v. 32, n. 17, p. i464, doi. 10.1093/bioinformatics/btw435
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- Publication type:
- Article
Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data.
- Published in:
- Bioinformatics, 2016, v. 32, n. 17, p. i559, doi. 10.1093/bioinformatics/btw453
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- Publication type:
- Article
ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types.
- Published in:
- 2015
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- Publication type:
- Product Review
Molecular harvesting with electroporation for tissue profiling.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-51634-7
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- Publication type:
- Article
The Functional 3D Organization of Unicellular Genomes.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48798-7
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- Publication type:
- Article
Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer.
- Published in:
- Nature Communications, 2013, v. 4, n. 7, p. 2175, doi. 10.1038/ncomms3175
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- Publication type:
- Article
EGF Decreases the Abundance of MicroRNAs That Restrain Oncogenic Transcription Factors.
- Published in:
- Science Signaling, 2010, v. 3, n. 124, p. 1, doi. 10.1126/scisignal.2000876
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- Publication type:
- Article
Efficient gene expression signature for a breast cancer immuno-subtype.
- Published in:
- PLoS ONE, 2021, v. 16, n. 1, p. 1, doi. 10.1371/journal.pone.0245215
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- Publication type:
- Article
Systematic Dissection of the Sequence Determinants of Gene 3’ End Mediated Expression Control.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pgen.1005147
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- Publication type:
- Article
Clinically driven semi-supervised class discovery in gene expression data.
- Published in:
- Bioinformatics, 2008, v. 24, n. 16, p. i90, doi. 10.1093/bioinformatics/btn279
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- Publication type:
- Article
Optimization of probe coverage for high-resolution oligonucleotide aCGH.
- Published in:
- Bioinformatics, 2007, v. 23, n. 2, p. e77, doi. 10.1093/bioinformatics/btl316
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- Publication type:
- Article
Similarities and differences of gene expression in yeast stress conditions.
- Published in:
- Bioinformatics, 2007, v. 23, n. 2, p. e184, doi. 10.1093/bioinformatics/btl308
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- Publication type:
- Article
A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data.
- Published in:
- Bioinformatics, 2007, v. 23, n. 2, p. e91, doi. 10.1093/bioinformatics/btl298
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- Publication type:
- Article
Nondestructive protein sampling with electroporation facilitates profiling of spatial differential protein expression in breast tumors in vivo.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19984-x
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- Publication type:
- Article
CRISPECTOR provides accurate estimation of genome editing translocation and off-target activity from comparative NGS data.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22417-4
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- Publication type:
- Article
Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21578-6
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- Publication type:
- Article
Distributed flux balance analysis simulations of serial biomass fermentation by two organisms.
- Published in:
- PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0227363
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- Publication type:
- Article
Cancer computational biology.
- Published in:
- 2011
- By:
- Publication type:
- Editorial
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-48
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- Publication type:
- Article
Semi-supervised class discovery using quantitative phenotypes -- CVD as a case study.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S8-S6
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- Publication type:
- Article
Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases.
- Published in:
- Human Molecular Genetics, 2007, v. 16, n. 23, p. 2783, doi. 10.1093/hmg/ddm208
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- Publication type:
- Article
Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data.
- Published in:
- PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0053014
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- Publication type:
- Article
Systematic Determination of Replication Activity Type Highlights Interconnections between Replication, Chromatin Structure and Nuclear Localization.
- Published in:
- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0048986
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- Publication type:
- Article
Global Methylation Patterns in Idiopathic Pulmonary Fibrosis.
- Published in:
- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0033770
- By:
- Publication type:
- Article
miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors.
- Published in:
- PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016915
- By:
- Publication type:
- Article
A Novel Translocation Breakpoint within the BPTF Gene Is Associated with a Pre-Malignant Phenotype.
- Published in:
- PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009657
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- Publication type:
- Article
Small Deletion Variants Have Stable Breakpoints Commonly Associated with Alu Elements.
- Published in:
- PLoS ONE, 2008, v. 3, n. 8, p. 1, doi. 10.1371/journal.pone.0003104
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- Publication type:
- Article
Author Correction: Data storage in DNA with fewer synthesis cycles using composite DNA letters.
- Published in:
- 2019
- By:
- Publication type:
- Correction Notice
Data storage in DNA with fewer synthesis cycles using composite DNA letters.
- Published in:
- Nature Biotechnology, 2019, v. 37, n. 10, p. 1229, doi. 10.1038/s41587-019-0240-x
- By:
- Publication type:
- Article
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer.
- Published in:
- Nature Genetics, 2007, v. 39, n. 2, p. 232, doi. 10.1038/ng1950
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- Publication type:
- Article