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Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.
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- Proteins, 2008, v. 71, n. 2, p. 982, doi. 10.1002/prot.21786
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Using scores derived from statistical coupling analysis to distinguish correct and incorrect folds in de-novo protein structure prediction.
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- Proteins, 2008, v. 71, n. 2, p. 950, doi. 10.1002/prot.21779
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Analyzing the catalytic mechanism of MPtpA: A low molecular weight protein tyrosine phosphatase from Mycobacterium tuberculosis through site-directed mutagenesis.
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- Proteins, 2008, v. 71, n. 2, p. 706, doi. 10.1002/prot.21816
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Effect of bivalent cations on the interaction of transketolase with its donor substrate.
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- Proteins, 2008, v. 71, n. 2, p. 541, doi. 10.1002/prot.21880
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Crystal structure of UDP- N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP- N-acetylglucosamine and fosfomycin.
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- Proteins, 2008, v. 71, n. 2, p. 1032, doi. 10.1002/prot.21959
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CLEMAPS: Multiple alignment of protein structures based on conformational letters.
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- Proteins, 2008, v. 71, n. 2, p. 728, doi. 10.1002/prot.21739
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Thermodynamic and kinetic determinants of Thermotoga maritima cold shock protein stability: A structural and dynamic analysis.
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- Proteins, 2008, v. 71, n. 2, p. 655, doi. 10.1002/prot.21729
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A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure.
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- Proteins, 2008, v. 71, n. 2, p. 1038, doi. 10.1002/prot.21962
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Solution structure of At3g28950 from Arabidopsis thaliana.
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- Proteins, 2008, v. 71, n. 2, p. 546, doi. 10.1002/prot.21936
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NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.
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- Proteins, 2008, v. 71, n. 2, p. 1027, doi. 10.1002/prot.21947
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Sequence-similar, structure-dissimilar protein pairs in the PDB.
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- Proteins, 2008, v. 71, n. 2, p. 891, doi. 10.1002/prot.21770
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Evolution of binding sites for zinc and calcium ions playing structural roles.
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- Proteins, 2008, v. 71, n. 2, p. 813, doi. 10.1002/prot.21741
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Understanding the structural and functional differences between mouse thyrotropin-releasing hormone receptors 1 and 2.
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- Proteins, 2008, v. 71, n. 2, p. 783, doi. 10.1002/prot.21763
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X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus.
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- Proteins, 2008, v. 71, n. 2, p. 534, doi. 10.1002/prot.21888
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Negative modulation of signal transduction via interleukin splice variation.
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- Proteins, 2008, v. 71, n. 2, p. 751, doi. 10.1002/prot.21756
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Probing ligand binding modes of human cytochrome P450 2J2 by homology modeling, molecular dynamics simulation, and flexible molecular docking.
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- Proteins, 2008, v. 71, n. 2, p. 938, doi. 10.1002/prot.21778
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Cluster conservation as a novel tool for studying protein-protein interactions evolution.
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- Proteins, 2008, v. 71, n. 2, p. 621, doi. 10.1002/prot.21749
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Crystal structure of the dimeric Urm1 from the yeast Saccharomyces cerevisiae.
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- Proteins, 2008, v. 71, n. 2, p. 1050, doi. 10.1002/prot.21975
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An alternate sucrose binding mode in the E203Q Arabidopsis invertase mutant: An X-ray crystallography and docking study.
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- Proteins, 2008, v. 71, n. 2, p. 552, doi. 10.1002/prot.21700
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Structural insight into the distinct properties of copper transport by the Helicobacter pylori CopP protein.
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- Proteins, 2008, v. 71, n. 2, p. 1007, doi. 10.1002/prot.21957
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Exploring the molecular basis of heme coordination in human neuroglobin.
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- Proteins, 2008, v. 71, n. 2, p. 695, doi. 10.1002/prot.21814
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- Article
Crystal structure and functional analysis identify the P-loop containing protein YFH7 of Saccharomyces cerevisiae as an ATP-dependent kinase.
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- Proteins, 2008, v. 71, n. 2, p. 804, doi. 10.1002/prot.21740
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Binding similarity network of ligand.
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- Proteins, 2008, v. 71, n. 2, p. 960, doi. 10.1002/prot.21780
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A Mg<sup>2+</sup>-induced conformational switch rendering a competent DNA polymerase catalytic complex.
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- Proteins, 2008, v. 71, n. 2, p. 565, doi. 10.1002/prot.21711
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Role of the IXI/V motif in oligomer assembly and function of StHsp14.0, a small heat shock protein from the acidothermophilic archaeon, Sulfolobus tokodaii strain 7.
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- Proteins, 2008, v. 71, n. 2, p. 771, doi. 10.1002/prot.21762
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Structural disorder serves as a weak signal for intracellular protein degradation.
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- Proteins, 2008, v. 71, n. 2, p. 903, doi. 10.1002/prot.21773
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Effects of glycerol on the compaction and stability of the wild type and mutated rabbit muscle creatine kinase.
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- Proteins, 2008, v. 71, n. 2, p. 844, doi. 10.1002/prot.21744
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Molecular dynamics simulations of ethanol binding to the transmembrane domain of the glycine receptor: Implications for the channel potentiation mechanism.
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- Proteins, 2008, v. 71, n. 2, p. 972, doi. 10.1002/prot.21784
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The balance between the rates of incorporation and pyrophosphorolytic removal influences the HIV-1 reverse transcriptase bypass of an abasic site with deoxy-, dideoxy-, and ribonucleotides.
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- Proteins, 2008, v. 71, n. 2, p. 715, doi. 10.1002/prot.21829
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Human uroporphyrinogen III synthase: NMR-based mapping of the active site.
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- Proteins, 2008, v. 71, n. 2, p. 855, doi. 10.1002/prot.21755
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Factors affecting the use of <sup>13</sup>C<sup>α</sup> chemical shifts to determine, refine, and validate protein structures.
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- Proteins, 2008, v. 71, n. 2, p. 641, doi. 10.1002/prot.21726
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Structure-function relationships in the 2-oxo acid dehydrogenase family: Substrate-specific signatures and functional predictions for the 2-oxoglutarate dehydrogenase-like proteins.
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- Proteins, 2008, v. 71, n. 2, p. 874, doi. 10.1002/prot.21766
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Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S-A novel motif scan algorithm with optional secondary structure constraints.
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- Proteins, 2008, v. 71, n. 2, p. 631, doi. 10.1002/prot.21777
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The differences in the microenvironment of the two tryptophan residues of the glutamine-binding protein from Escherichia coli shed light on the binding properties and the structural dynamics of the protein.
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- Proteins, 2008, v. 71, n. 2, p. 743, doi. 10.1002/prot.21748
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Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 Å resolution.
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- Proteins, 2008, v. 71, n. 2, p. 1042, doi. 10.1002/prot.21967
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Structural analysis of protein dynamics by MD simulations and NMR spin-relaxation.
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- Proteins, 2008, v. 71, n. 2, p. 684, doi. 10.1002/prot.21750
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Analysis of the protein kinome of Entamoeba histolytica.
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- Proteins, 2008, v. 71, n. 2, p. 995, doi. 10.1002/prot.21790
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Modeling the accessible conformations of the intrinsically unstructured transactivation domain of p53.
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- Proteins, 2008, v. 71, n. 2, p. 587, doi. 10.1002/prot.21721
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Characterization of local geometry of protein surfaces with the visibility criterion.
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- Proteins, 2008, v. 71, n. 2, p. 670, doi. 10.1002/prot.21732
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The 1.38 Å crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway.
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- Proteins, 2008, v. 71, n. 2, p. 525, doi. 10.1002/prot.21828
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The blind search for the closed states of hinge-bending proteins.
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- Proteins, 2008, v. 71, n. 2, p. 831, doi. 10.1002/prot.21743
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Protein structure mining using a structural alphabet.
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- Proteins, 2008, v. 71, n. 2, p. 920, doi. 10.1002/prot.21776
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Crystal structure of Bacillus subtilis CodW, a noncanonical HslV-like peptidase with an impaired catalytic apparatus.
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- Proteins, 2008, v. 71, n. 2, p. 1020, doi. 10.1002/prot.21758
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Influence of oligomerization on the dynamics of G-protein coupled receptors as assessed by normal mode analysis.
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- Proteins, 2008, v. 71, n. 2, p. 575, doi. 10.1002/prot.21787
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The confirmation of the denatured structure of pyrrolidone carboxyl peptidase under nondenaturing conditions: Difference in helix propensity of two synthetic peptides with single amino acid substitution.
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- Proteins, 2008, v. 71, n. 2, p. 737, doi. 10.1002/prot.21742
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Molecular modeling of the second extracellular loop of G-protein coupled receptors and its implication on structure-based virtual screening.
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- Proteins, 2008, v. 71, n. 2, p. 599, doi. 10.1002/prot.21724
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Evolution of the β-propeller fold.
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- Proteins, 2008, v. 71, n. 2, p. 795, doi. 10.1002/prot.21764
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Context-specific amino acid substitution matrices and their use in the detection of protein homologs.
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- Proteins, 2008, v. 71, n. 2, p. 910, doi. 10.1002/prot.21775
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