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Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL- 17- and TLR4-dependent arthritis.
- Published in:
- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0278-2
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- Publication type:
- Article
Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.
- Published in:
- Microbial Biotechnology, 2011, v. 4, n. 3, p. 383, doi. 10.1111/j.1751-7915.2011.00247.x
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- Publication type:
- Article
Genome (re-)annotation and open-source annotation pipelines.
- Published in:
- 2010
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- Publication type:
- Other
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 3, p. 315, doi. 10.1093/bib/bbs034
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- Publication type:
- Article
The relative value of operon predictions.
- Published in:
- Briefings in Bioinformatics, 2008, v. 9, n. 5, p. 367, doi. 10.1093/bib/bbn019
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- Publication type:
- Article
Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data.
- Published in:
- Scientific Reports, 2017, p. 42808, doi. 10.1038/srep42808
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- Publication type:
- Article
Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and Germination Characteristics.
- Published in:
- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0127036
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- Publication type:
- Article
<i>Bacillus pumilus</i> Reveals a Remarkably High Resistance to Hydrogen Peroxide Provoked Oxidative Stress.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085625
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- Publication type:
- Article
Reduce Manual Curation by Combining Gene Predictions from Multiple Annotation Engines, a Case Study of Start Codon Prediction
- Published in:
- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063523
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- Publication type:
- Article
Genome Sequence of <i>Lactobacillus pentosus</i> KCA1: Vaginal Isolate from a Healthy Premenopausal Woman.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059239
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- Publication type:
- Article
Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045097
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- Publication type:
- Article
ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data.
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- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043012
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- Publication type:
- Article
Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes.
- Published in:
- 2017
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- Publication type:
- journal article
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data.
- Published in:
- BMC Infectious Diseases, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2334-13-110
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- Publication type:
- Article
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data.
- Published in:
- 2013
- By:
- Publication type:
- journal article
Supervised Lowess normalization of comparative genome hybridization data -- application to lactococcal strain comparisons.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-93
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- Publication type:
- Article
A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-56065-y
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- Publication type:
- Article
BAGEL: a web-based bacteriocin genome mining tool.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w273, doi. 10.1093/nar/gkl237
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- Publication type:
- Article
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w560, doi. 10.1093/nar/gki356
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- Publication type:
- Article
Projector: automatic contig mapping for gap closure purposes.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 22, p. e144, doi. 10.1093/nar/gng144
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- Publication type:
- Article
Correction: Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice.
- Published in:
- 2019
- By:
- Publication type:
- Correction Notice
Natural variation in wild tomato trichomes; selecting metabolites that contribute to insect resistance using a random forest approach.
- Published in:
- BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-03070-x
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- Publication type:
- Article
Microbial bioinformatics for food safety and production.
- Published in:
- Briefings in Bioinformatics, 2016, v. 17, n. 2, p. 283, doi. 10.1093/bib/bbv034
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- Publication type:
- Article
Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice.
- Published in:
- Carcinogenesis, 2015, v. 36, n. 11, p. 1388, doi. 10.1093/carcin/bgv120
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- Publication type:
- Article
An In vitro Model for Bacterial Growth on Human Stratum Corneum.
- Published in:
- Acta Dermato-Venereologica, 2016, v. 96, n. 7, p. 873, doi. 10.2340/00015555-2401
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- Publication type:
- Article
The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.
- Published in:
- Clinical Infectious Diseases, 2019, v. 68, n. 1, p. 61, doi. 10.1093/cid/ciy417
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- Publication type:
- Article
Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in L. lactis SK11.
- Published in:
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02418
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- Publication type:
- Article
Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis.
- Published in:
- PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167944
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- Publication type:
- Article
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes.
- Published in:
- Bioinformatics, 2007, v. 23, n. 9, p. 1161, doi. 10.1093/bioinformatics/btl658
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- Publication type:
- Article
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.
- Published in:
- Bioinformatics, 2004, v. 20, n. 13, p. 2075, doi. 10.1093/bioinformatics/bth206
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- Publication type:
- Article
Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.
- Published in:
- Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-017-0395-y
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- Publication type:
- Article
Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216<sup>T</sup>.
- Published in:
- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0172-8
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- Publication type:
- Article
Advances and perspectives in computational prediction of microbial gene essentiality.
- Published in:
- Briefings in Functional Genomics, 2017, v. 16, n. 2, p. 70, doi. 10.1093/bfgp/elv063
- By:
- Publication type:
- Article
Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice.
- Published in:
- PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219366
- By:
- Publication type:
- Article
Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network.
- Published in:
- PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0214868
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- Publication type:
- Article
Genotypic adaptations associated with prolonged persistence of Lactobacillus plantarum in the murine digestive tract.
- Published in:
- Biotechnology Journal, 2013, v. 8, n. 8, p. 895, doi. 10.1002/biot.201200259
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- Publication type:
- Article
Transcriptomic signatures of peroxisome proliferator-activated receptor alpha (PPARalpha) in different mouse liver models identify novel aspects of its biology.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 1391, doi. 10.1186/1471-2164-15-1106
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- Publication type:
- Article
From microbial gene essentiality to novel antimicrobial drug targets.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 958, doi. 10.1186/1471-2164-15-958
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- Publication type:
- Article
Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-7
- By:
- Publication type:
- Article
A predicted physiochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis.
- Published in:
- BMC Genomics, 2010, v. 11, p. 299, doi. 10.1186/1471-2164-11-299
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- Publication type:
- Article
CiVi: circular genome visualization with unique features to analyze sequence elements.
- Published in:
- Bioinformatics, 2015, v. 31, n. 17, p. 2867, doi. 10.1093/bioinformatics/btv249
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- Publication type:
- Article
PanCGHweb: a web tool for genotype calling in pangenome CGH data.
- Published in:
- Bioinformatics, 2010, v. 26, n. 9, p. 1256, doi. 10.1093/bioinformatics/btq103
- By:
- Publication type:
- Article
MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data.
- Published in:
- Bioinformatics, 2009, v. 25, n. 4, p. 550, doi. 10.1093/bioinformatics/btp013
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- Publication type:
- Article
MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.
- Published in:
- Bioinformatics, 2009, v. 25, n. 1, p. 139, doi. 10.1093/bioinformatics/btn588
- By:
- Publication type:
- Article
Gut microbiome in ADHD and its relation to neural reward anticipation.
- Published in:
- PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0183509
- By:
- Publication type:
- Article
Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods.
- Published in:
- BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-68
- By:
- Publication type:
- Article